Aleu013405.1
Basic Information
- Insect
- Argyra leucocephala
- Gene Symbol
- -
- Assembly
- GCA_963942445.1
- Location
- OZ012678.1:169608576-169613772[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0055 0.78 11.4 0.3 3 23 42 63 40 63 0.95 2 19 1.4 2e+02 3.9 1.5 3 20 240 256 238 258 0.89 3 19 0.0041 0.58 11.8 4.9 1 23 266 289 266 289 0.96 4 19 0.00031 0.044 15.4 0.5 1 23 295 319 295 319 0.97 5 19 0.0039 0.55 11.9 0.5 1 23 324 346 324 346 0.97 6 19 0.0039 0.56 11.9 2.0 3 23 402 421 400 421 0.96 7 19 0.00013 0.018 16.6 0.5 1 23 428 451 428 451 0.97 8 19 4.4e-06 0.00062 21.2 0.9 1 23 457 481 457 481 0.97 9 19 0.0048 0.69 11.6 4.4 1 23 487 510 487 510 0.96 10 19 3.7e-05 0.0053 18.2 0.3 3 23 518 538 516 538 0.97 11 19 3.4e-05 0.0048 18.4 2.4 1 23 544 566 544 566 0.98 12 19 0.0099 1.4 10.6 0.5 1 23 572 594 572 594 0.96 13 19 7.8 1.1e+03 1.5 0.2 14 23 748 757 745 757 0.88 14 19 0.065 9.3 8.0 0.5 1 23 764 787 764 787 0.95 15 19 3e-05 0.0042 18.6 0.2 1 23 801 825 801 825 0.95 16 19 0.00015 0.021 16.4 7.5 1 23 831 853 831 854 0.95 17 19 0.00072 0.1 14.2 0.4 3 23 862 882 860 882 0.96 18 19 3.6e-05 0.0051 18.3 1.3 1 23 888 910 888 910 0.98 19 19 0.0099 1.4 10.6 0.5 1 23 916 938 916 938 0.96
Sequence Information
- Coding Sequence
- atgagtTCAAAGTTCAAAATTGAAGTAGGAAACCTAAAAGAAAATACCACTGACTATAGCAATATTAAAAAGGAGAAATGCGGTGAAATTCTAATTACAAATAAtggaatatttgaaataaattgtttattatgtgataatgtttttaaaaatataagaaattatgcTAGACATATTTTACGAAGCCATTTTCAATGTGAAGCAAATTCTACTATTGACTATCtagttgaaattgaaaaaaaaactgatcaAGATCAAGAAATTAAATCGGAAAATCAACAAACTTTGGAAGACAAAAGTATTATCAAAAATGAAGATGattcaaaagaatataataattttgtaaataatcagaaaataatagaagaaaTAGAAGTTAATAATGTAGAGTCAATAGATaacataataaatgaaatggAAATGAACTATAGTTTATTTGATAGCAATACAGATAATCAAGTGGATTCAGAGTTAGACATAGATGATGATGTACCTttaagtgatttaaaaaaattgcaaaattcgccaaaaaatattaaaaatgatgatgCTGAAGATGATTCTTCTATTTGCTCGGAAAATTTCCAACCTGAAAATATCGAATTTATAAGCCATAGCATAGAAATTGAAGATGAAAATAAGAATAGTGTAAAggatattgataataaaaatgacaaattagaaaatatatctgaaaaatttttagataaaactaattgtaaaaattgtggtaaagaaataagtaaaaataaacttCGATCGCATTTATGTGCAAATGATGGTAGTCGATATATACATCAATGTAATCATTGTTTAAAATTGTTCGTttctaaaaaaactttaaacttgcatattaaaaatttgcacaCCGAAGAGAAACCATTTGTTTGCGAAATTGATAAATGTGGTAAAAgatatgtaagtatatttgCCCTCAGGTATCATATGAAACGACATGGAGATAGAccatttatttgtaatatatgtGGAACaggatttttatatCAATCTCGACTAGATCAACATATGAAACAAcacattaataaattaagaaaagaaactggtaTGGAAACACAAAATTCTATTGCAATAGACAACAAGCATGTGAACAATCCAATTATCAAAGAAAAACGTTTTAAACAACCACATatgattaaatcaaaaaaggaaaaaaaaaaaaaaagaatcgcTAGTAAAACTATATGCGATACTTGCGGCAAGGAACTAACTAAAGATCATATGCGGAAACATTTAAGAATTCATGATAATTCtcgaaaaacttttaaatgtgatatttgtacaaaagtttttatatctGAAAAAAGTTTGGATTATCATGTTAGAAATGTACATACCAATGATAAACCGTTTGAATGCACAATTGAACACTGTGGGAAAAAATTCGTTGATGAAAGCTCTTTGAAATGGCATATAACCAGACATACTAGTCCTAGAAACCACAAATGTCATATTTGCGATAAAGCatATTTTTATCGAAATCGTTTAGAAGAACATATAAAACTTTATCATGTAAATGGCCGAATATATGGTTGCGATATATGTGGAAAAAGGTATTTTGAACAGAGTACCCTAAATCGTCATCAAATTGTTCACAGTGGAGAAAAACCTTTTGAATGTGATGAATGTCCAGCTAAATTTAGTCGACGTCATACATTAGCAAGACATAAAAAATCTCATACGGGTATAAAAGATTTTACATGTAAAATATGTGGAAAACAATATGCACTTTATAACGGAATCTATTCTCATATGAAAGGACATGGTATTAAATATTCATTGGCTTATGAAAAGGaaattgaaaacattattgATCTAGATCAAAACATTAAATCAGAAAATCAACAAACCCCAGAAAgcgaaaatattattaaaaatgaaaacgatTCAAACGAATATGATATTTTTGTCAATAATCAGGAACTAATAGAAGAAGTACAACATATAAATGTAGAATCAATGGATAACGTAATGAATGAAATGGAAATGAACTATAGTTTATTTGATAACAATACAGAAAATAAAGTGGATTCAGAGTTAGACATAGACGATGATGTACCTttaagtgatttaaaaaaattgcaaaattcgccaaaaaatattaaaaatgatgataCTGAAGATGATTCTATTTGCTCGAAAAATTTCCAACCGGAAAATGTCGAATTTATAAGCCATAGCATAGAAATTGAAGATGAAAATAAGAATATTGAAATATCTACAGATAATATGCggaaacatataaaaattcatgataattttcgaaaaacttttaaatgtgatatttgcaaaaaagtacttttatctgaaaaaaatttggattatCATGTTAAAAGTGTACATACCAATGATAAACCaaattttcatatcaatgATAAACCGTTTGCATGTACAATCGAACAGTGTGAAAAACGATTCGTTAATAAGAGTGCTTTAAAATGGCACATAATCAGACATACTAGTCGTGGAAAACATAAGTGTGAAATGTGTGATAAAAcATTTATTCATCGATCTCGTTTAaaagaacatataaaaaatcatCATGTTAATGGTCGAATATTTGGGTGTGATACATGCGGAAaacaatattttgATCAAAGTACTCTAGATCGTCATCAAGTAGTTCATAGTGGAGAAAAACCATTTGAATGTGATGAATGTCCAGCTAAATTTAGTCGTCAGCATACTTTAGCATGGCACAAAAAATCACATTCGGATGTGAAAGATTTTACATGCAAAATATGTGGAAAACAATATGCACTTTATAACGGAATCTATTCTCATATGAAAGGACATGGTATTAAATATTCATTGGCTTATGAAAAGGGTTTAACTGATGGAAAATCAGattaa
- Protein Sequence
- MSSKFKIEVGNLKENTTDYSNIKKEKCGEILITNNGIFEINCLLCDNVFKNIRNYARHILRSHFQCEANSTIDYLVEIEKKTDQDQEIKSENQQTLEDKSIIKNEDDSKEYNNFVNNQKIIEEIEVNNVESIDNIINEMEMNYSLFDSNTDNQVDSELDIDDDVPLSDLKKLQNSPKNIKNDDAEDDSSICSENFQPENIEFISHSIEIEDENKNSVKDIDNKNDKLENISEKFLDKTNCKNCGKEISKNKLRSHLCANDGSRYIHQCNHCLKLFVSKKTLNLHIKNLHTEEKPFVCEIDKCGKRYVSIFALRYHMKRHGDRPFICNICGTGFLYQSRLDQHMKQHINKLRKETGMETQNSIAIDNKHVNNPIIKEKRFKQPHMIKSKKEKKKKRIASKTICDTCGKELTKDHMRKHLRIHDNSRKTFKCDICTKVFISEKSLDYHVRNVHTNDKPFECTIEHCGKKFVDESSLKWHITRHTSPRNHKCHICDKAYFYRNRLEEHIKLYHVNGRIYGCDICGKRYFEQSTLNRHQIVHSGEKPFECDECPAKFSRRHTLARHKKSHTGIKDFTCKICGKQYALYNGIYSHMKGHGIKYSLAYEKEIENIIDLDQNIKSENQQTPESENIIKNENDSNEYDIFVNNQELIEEVQHINVESMDNVMNEMEMNYSLFDNNTENKVDSELDIDDDVPLSDLKKLQNSPKNIKNDDTEDDSICSKNFQPENVEFISHSIEIEDENKNIEISTDNMRKHIKIHDNFRKTFKCDICKKVLLSEKNLDYHVKSVHTNDKPNFHINDKPFACTIEQCEKRFVNKSALKWHIIRHTSRGKHKCEMCDKTFIHRSRLKEHIKNHHVNGRIFGCDTCGKQYFDQSTLDRHQVVHSGEKPFECDECPAKFSRQHTLAWHKKSHSDVKDFTCKICGKQYALYNGIYSHMKGHGIKYSLAYEKGLTDGKSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -