Aleu007970.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Argyra leucocephala
Gene Symbol
-
Assembly
GCA_963942445.1
Location
OZ012678.1:9953931-9956765[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00043 0.06 14.9 1.3 1 23 188 210 188 210 0.98
2 16 4.7e-05 0.0067 17.9 2.3 1 23 217 239 217 239 0.97
3 16 0.04 5.7 8.7 2.4 3 23 264 284 262 284 0.97
4 16 8.9e-05 0.013 17.1 1.4 1 23 289 311 289 311 0.96
5 16 0.061 8.7 8.1 0.8 1 23 319 341 319 341 0.94
6 16 0.0016 0.23 13.1 0.1 2 23 367 388 366 388 0.95
7 16 0.058 8.2 8.2 3.4 1 21 470 490 470 493 0.96
8 16 0.077 11 7.8 0.1 1 20 500 519 500 521 0.90
9 16 0.009 1.3 10.8 1.3 1 23 530 552 530 553 0.96
10 16 7.9e-08 1.1e-05 26.7 3.8 3 23 572 592 570 592 0.97
11 16 4.2e-05 0.0059 18.1 4.7 1 23 599 621 599 621 0.98
12 16 6.5e-06 0.00092 20.6 1.5 2 23 636 657 635 657 0.95
13 16 1.1e-07 1.6e-05 26.2 1.3 1 23 663 685 663 685 0.99
14 16 9.5e-07 0.00013 23.3 3.3 3 23 693 713 691 713 0.96
15 16 2.5e-07 3.5e-05 25.1 1.3 1 23 719 741 719 741 0.99
16 16 0.00017 0.025 16.1 0.2 1 23 747 771 747 771 0.94

Sequence Information

Coding Sequence
atgtctaaaataatacaaaatcttAATGTAGATATTACATGCCGGTCATGTTTGACTGAATGTGATACACTATCGTCTTTATATTCAGTAACAGCAACATTCCATTCATCTATAACTTTAggtgaaattttatcaaaactttTTCAAGTTAAGTTGAATCCAAAATTGGAATTGCCAACTAAAATATGTGACCTTTGCCAACAAGAACTAATTACGGCCtacaattttaagttaaaaactgAAGAAAGCGAAAGTGCTCTTTTTGATTATTTGCGTCGGAATAACTTAATCAATTCAGATGAAATCTTAATTGATTCCGATTTTGATTGCTTAAAAATAAAGGatgaaaaaaatgatgaaaattattatgttgaaaattttaatccaGAACCCCCTCCAAATGAATTTAATACTGATGAAAGTATTAACAATGACGAACAAGAACTAGATACACAAAATTATAGCGAAAATGacgaaaaaaattcaaataaggaTGAAGATATGTCAGGTGAAGAAAATAGAGAAGCTTTATCAATGAGTATCATACGAAAGGTTGGTAATTTTAGTTGCAATCGATGTAGTTCAGTATTTTCAACTCAATTCCAATTGgataatcatataaaaattcatgaaaagggtcccatcaaattttattgtgaAGCTTGCGATAAATGTTTTGCAACAAGTAGAAATTTAGGACGACATCTAAAGTTACATATTAAAAAGAAGAAGGATTTGGAAAAAGAATCACCGCCAAAATTAATTACTCCAATAGAAAGGAATTATGGTTGTAAAAATTgttcatcaaaattttcaaatgctAGCCAATTAGAATGCCATATGAAGGCTCATACTggtaaaaatttctattgtgaACCATGTGATAGATTCTTTGTAAATAACCGAAACTTACAGAGGCATTTAAAACTTCATtctgataaaaaagaaaatgaatttaaatgcaCTCAGTGTGCTGAatcatttgaaacaaaattaaaatggaaactGCACGAAATAAATCACtgtaaatttttagttgaaattgATGGTACCGATTTGGATAAAAATAGTTGTATGCCCcatgaatcaaaaaatttagaatgtaAGATTTGTGAcgcaaaatttgataaaatttctttattacgTCAGCATTTGATAGCGCATAGCCAAGAAGAGACAATAGATGAAgtatttgttgaaaatagttattatttaaaaagtttaattccAGATCATACAGAAAACGTTCAAACAATTGTAAATTTCATAAGTGAGGAAATACGAAATAGGAggttgcaaaaattttattccggCACCAATTTAGTTGGTAACGAATTACATTTAAGTGATTCAGAAACTGATATGGACAACGAAAAAGAAGTTAAAACAGAAAATCCATCTCGTTTATATAAATGTGAAAGCTGCTCCGAAACATTTGATCgtcgttataaaattttaaatcatcaaCGTTGTGCACATACATTAGAGGATCATAAATATGAATGCGATATTTGTGGTATGCGGTATGTTGCTCAAGATTTACTTGATTATCATAAAACATCTCAATGTtataatgaagaaaaacaatttacatGTGATGtgtgtaaaatgaaatttatgtgGAAATCGAATATTGAAGAACATATAAGGATTCATCATAGTAAAACAGcacaaaaattaattcgaagatATTCTTCAAAACGTAAATTAGATTGTGATATATGTCATAAGAAATTTTCAAGGCCAGAACATTTGGAACGTCATATGCGAACACACAATCCAGCTGAAAAGAAATTTGAATGTCCCACGTGTAAGAAAAAGTTTAGTAGAAAAGATAATTTACGTTGTCACTTAAAAGTTCATGATGAGAAGCGTACTGATATTGGCGATGAAGGTAAAGATTTTCTTTGTGTTTTTTGTGGCCGGAAATTTCGTAATTCATCAAATTTGGTTGTTCATACAAGACGTCATACGGGAGAAAAACCATTCAAATGTGATTTATGTGATAAAGGTTTTCCAAGATCATCAGATTTACGAACTCATCGTCGTACTCATACAGGGGAGAAGCCACATTTGTGTAATACTTGCGGTAAAGGATTTTCTAGATCAAATAAATTGACAAGACATATGCGTATTCATACTGGAGATCGACCTTATAAATGTACTTATTGTGAACGTGCCTTTACTCAATCTAACGATCTAACAATCCACATACGAAGACATACGGGTGAAAAACCATATACATGTGGTATTTGTGGTGAACGCTTTATTCAAGGAACAGCTCTTCAAACACATCGTAAGACTCGTGGACATTATGAAGATGTTGAAGGTATTGAAGTTCCATTTGctcatttaagtcaaaataatccAAATCCTTTAAATAATGCGGGTCGTGTTGATCAAATTGGAATACCTAAgccgaatttattaaaaaataattcccaACTTGTTAGCAATAATGAAGATGTAAAAccaatgaaaaatgaaataattgatgATGATAACATTGTTTCTATTACAGAAAATCCTAAAgaaagtaattcaaataatcaaaataattttgttcaacaaAATCTTTTAGATCGAAATACGGATTCTGATGCTGTTAAtacttcatttaattataaGGATATTTCAAGTTTTGTAGCAAGTGCCCAAGCTCATCATTCTTATACTCATTTAGCTTGCAATCCCTTAGCATTATTACAAGGTGCTACAATACATAATTctcaatatttaatatctaatcCTGCACATAATGGGAATCCAACATCTTCATCGGTATATGCAGTTTCAGGAACAGCAACAAGTCCTTATAGCAATGATTCCAATTAA
Protein Sequence
MSKIIQNLNVDITCRSCLTECDTLSSLYSVTATFHSSITLGEILSKLFQVKLNPKLELPTKICDLCQQELITAYNFKLKTEESESALFDYLRRNNLINSDEILIDSDFDCLKIKDEKNDENYYVENFNPEPPPNEFNTDESINNDEQELDTQNYSENDEKNSNKDEDMSGEENREALSMSIIRKVGNFSCNRCSSVFSTQFQLDNHIKIHEKGPIKFYCEACDKCFATSRNLGRHLKLHIKKKKDLEKESPPKLITPIERNYGCKNCSSKFSNASQLECHMKAHTGKNFYCEPCDRFFVNNRNLQRHLKLHSDKKENEFKCTQCAESFETKLKWKLHEINHCKFLVEIDGTDLDKNSCMPHESKNLECKICDAKFDKISLLRQHLIAHSQEETIDEVFVENSYYLKSLIPDHTENVQTIVNFISEEIRNRRLQKFYSGTNLVGNELHLSDSETDMDNEKEVKTENPSRLYKCESCSETFDRRYKILNHQRCAHTLEDHKYECDICGMRYVAQDLLDYHKTSQCYNEEKQFTCDVCKMKFMWKSNIEEHIRIHHSKTAQKLIRRYSSKRKLDCDICHKKFSRPEHLERHMRTHNPAEKKFECPTCKKKFSRKDNLRCHLKVHDEKRTDIGDEGKDFLCVFCGRKFRNSSNLVVHTRRHTGEKPFKCDLCDKGFPRSSDLRTHRRTHTGEKPHLCNTCGKGFSRSNKLTRHMRIHTGDRPYKCTYCERAFTQSNDLTIHIRRHTGEKPYTCGICGERFIQGTALQTHRKTRGHYEDVEGIEVPFAHLSQNNPNPLNNAGRVDQIGIPKPNLLKNNSQLVSNNEDVKPMKNEIIDDDNIVSITENPKESNSNNQNNFVQQNLLDRNTDSDAVNTSFNYKDISSFVASAQAHHSYTHLACNPLALLQGATIHNSQYLISNPAHNGNPTSSSVYAVSGTATSPYSNDSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-