Aleu019434.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Argyra leucocephala
Gene Symbol
-
Assembly
GCA_963942445.1
Location
OZ012679.1:127258835-127261677[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 4.9e-07 6.9e-05 24.2 2.4 1 23 154 176 154 176 0.99
2 16 0.0025 0.36 12.5 1.7 1 23 184 207 184 207 0.94
3 16 0.27 39 6.1 3.2 1 21 215 235 215 237 0.90
4 16 1.5e-05 0.0021 19.5 4.9 1 23 332 354 332 354 0.97
5 16 1.3e-05 0.0018 19.7 0.2 1 23 361 383 361 383 0.98
6 16 1.6e-05 0.0023 19.4 1.9 2 23 401 422 400 422 0.96
7 16 0.0034 0.48 12.1 4.9 1 23 436 458 436 458 0.98
8 16 1.6e-06 0.00023 22.6 0.6 1 23 464 486 464 486 0.98
9 16 8.4e-07 0.00012 23.4 4.5 1 23 492 514 492 514 0.99
10 16 2.6e-06 0.00037 21.9 1.6 1 23 520 542 520 542 0.94
11 16 2.6e-06 0.00036 21.9 0.8 1 23 548 570 548 570 0.99
12 16 6.9e-05 0.0098 17.4 3.2 1 23 576 598 576 598 0.97
13 16 3.5e-05 0.005 18.3 6.4 3 23 606 626 604 626 0.98
14 16 4.9e-06 0.00069 21.0 0.4 1 23 632 654 632 654 0.98
15 16 0.00022 0.031 15.8 2.7 1 23 660 682 660 682 0.97
16 16 0.0056 0.8 11.4 0.0 1 22 743 764 743 766 0.90

Sequence Information

Coding Sequence
ATGGTAGAAAATATGTGTAGAGCCTGTTTAATTTCTGAAGAAAAAGAAATGGCTTTTCAAAATATGCAAATGGCATTTACGGAAAATGATACAACAAttggaataatatttagtaaaattagtaCAGTTCAACAAAATCCAAATGATGGACTACCccaaaaaatatgtcaaaaatgtTTCGAAGAATTATCTGCTAGTTATGAGTTCCAAATGAAATGTTTGAAATCTGATATAGAAATAAGAAATGTGCTAAATATTTCTGAATATGCAGATACTAAGAGGAAGGATATCAAAGTTGAAGCTGGCGATTTCGAAATTGAACCCGAAATAGATGACTGGATTATCTATAGTGATGATGAAAAACCTGAAAATATAAGTGATAACTTAGCGGAACCAATTGATGAATTGGAGGAATCTACAGTAGAAAGacCGAATCcgaagaataaaagaaaaagttgtTATAAATGTGAAATATGTAACAAAGTCTTTGATcgaaatttcagttttaatcgTCATATTAAATCACATAAACCTGGTGAAGTTTTAGATTTTGAATGTGAAATTTGTCagtgtttattttcaaaagaaaaaaatcttgcAAAGCATTTAGAAGAAAAGCATTCAGAAAATGATAAAAGTTGCTATCCATGTCCCCATTGCCCAcggaaatttttgaaaaaggctTCAAGATCAGCTCACATGCAATGTCATAAATTCACTCCAACAAATAATAGTAACGAAagtagtataaaatatgaaaataatctgaaatatcaacctaaagaagaatttaagGATAATTTATCTCAAATTGATATAAAGCCAttacatttaattgaaaatgttgaCAACCCTGAAAAtatgtttgaaaataatattgttaaaaccgaaaaatctgaaaatgaaaataattcatataatgaagaaaatgaagatGGAAATGAAAGTGATGAAGTGGAACTacCTAATccgaaaaacaaaagaaaagctATTCATGAATGTGAAGTTTGTCATAAAAGTTTCGACAGAAAATATCGTTTACAAAGGCATTTAAATATTCACAATCCTGAAGGGCGCCCATTTGAATGTGAAGTTTGTAAATGGCGTTTTGCATCTGAACAAAATTTAACTAGACATGCTATTACACATACAGCTGTAGCTGAttgcataaaacaaaacaatgaaaaacCTAAAATATGTCGGTGCGTGTATTGTCCtagaaaatttgcaaaaaaggAATCACTAGCTTCCCATATGAGAGTTCATAAAGCAGATATGCCACCACCACAACTTcaagagaaaaattttcaatgtcagTTTTGTTCAAAAGCATTCCATAAAATCACATCTTTAACGAGACATTTATACACTCATGATGATGAAAAAGATTTTAAGTGTAATTTATGTGATAAAAGTTATTCCGTTAGAAGCCAGTTAGTTGATCATATGAATTGGCACAAAGGTATTAAACCATTTCAGTGTGAAATTTGCACAAAATCATTTAATCAGTCATGCACCTTAAAAGATCATATGCGTACGCATAGTGGAGAAAAACCTTTTCTATGTTCAGAATGTGGCAAAGGCTTTAATAATTCTTCCAATTTAAGACAACATACTTTTAGACATTCGGGTGATAAGCCTTTCAAGTGTAATGAATGTCCAAGTAGTTTTACGTCTAAAGgtgGCTTAACATCACACATGACTACACATACAAAATTAAGACCTCATGTGTGTGACACTTGTGGATCGGCTTTCACAAAAAGATATAGTTTAAAAAAGCACAAAAGAATTCATACTGGTGAAAAACCTTACGGTTGCACAACATGTCATATGagattcaCTTCTTCCAACCATTTGAAACGTCATATTAGAACCCATACTGGAGAGAAACCATATGCGTGTAAATATTGTGAAAGAGCTTTTGCTCAAagtaATGATCttgtaaaacatttaaaatcgcATTTAGgggataaaatatataaatgtggAAAATGTGGTGAATCATTTAGATTACATACGGAACTTCGTGATCATCAATATCAACATTATCGTGAGGAAAAACAACTTGAACAAGGAATAATGCAAGTTCAAGAAACAAAAGAACAGCCAGAAACAGAAACCCTTAGCAAGAAAAGTAATGAAACAATAAACAACGATAGTATAGTAGAAAATGAGAAAGTAGAATTCAAGTCTGAGTTACAAGAATCTATTATATATTCTGGGCAATATCAATGTTTAAATTGTGaatcaattttttcaactgcAGAAAATCTTGAAATGCATGAAATCGATGCACATAGTAAGAAGGAAGATtag
Protein Sequence
MVENMCRACLISEEKEMAFQNMQMAFTENDTTIGIIFSKISTVQQNPNDGLPQKICQKCFEELSASYEFQMKCLKSDIEIRNVLNISEYADTKRKDIKVEAGDFEIEPEIDDWIIYSDDEKPENISDNLAEPIDELEESTVERPNPKNKRKSCYKCEICNKVFDRNFSFNRHIKSHKPGEVLDFECEICQCLFSKEKNLAKHLEEKHSENDKSCYPCPHCPRKFLKKASRSAHMQCHKFTPTNNSNESSIKYENNLKYQPKEEFKDNLSQIDIKPLHLIENVDNPENMFENNIVKTEKSENENNSYNEENEDGNESDEVELPNPKNKRKAIHECEVCHKSFDRKYRLQRHLNIHNPEGRPFECEVCKWRFASEQNLTRHAITHTAVADCIKQNNEKPKICRCVYCPRKFAKKESLASHMRVHKADMPPPQLQEKNFQCQFCSKAFHKITSLTRHLYTHDDEKDFKCNLCDKSYSVRSQLVDHMNWHKGIKPFQCEICTKSFNQSCTLKDHMRTHSGEKPFLCSECGKGFNNSSNLRQHTFRHSGDKPFKCNECPSSFTSKGGLTSHMTTHTKLRPHVCDTCGSAFTKRYSLKKHKRIHTGEKPYGCTTCHMRFTSSNHLKRHIRTHTGEKPYACKYCERAFAQSNDLVKHLKSHLGDKIYKCGKCGESFRLHTELRDHQYQHYREEKQLEQGIMQVQETKEQPETETLSKKSNETINNDSIVENEKVEFKSELQESIIYSGQYQCLNCESIFSTAENLEMHEIDAHSKKED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-