Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.002 0.77 10.9 0.5 13 29 10 26 3 34 0.83

2 6 0.58 2.3e+02 3.0 0.1 11 43 39 68 35 69 0.72

3 6 0.19 73 4.6 0.3 5 29 62 86 58 94 0.83

4 6 0.0002 0.079 14.1 1.6 3 40 117 149 116 151 0.91

5 6 5.7e-06 0.0022 19.1 2.7 6 39 147 176 146 180 0.88

6 6 0.95 3.7e+02 2.4 0.3 18 43 186 208 182 209 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.002	0.77	10.9	0.5	13	29	10	26	3	34	0.83
2	6	0.58	2.3e+02	3.0	0.1	11	43	39	68	35	69	0.72
3	6	0.19	73	4.6	0.3	5	29	62	86	58	94	0.83
4	6	0.0002	0.079	14.1	1.6	3	40	117	149	116	151	0.91
5	6	5.7e-06	0.0022	19.1	2.7	6	39	147	176	146	180	0.88
6	6	0.95	3.7e+02	2.4	0.3	18	43	186	208	182	209	0.77

Coding Sequence: ATGCGAACTAAACATAATATAGTACAAAAAACACAAGCagtcatttgtaaaatttgtggGAAAACATTTAAAAAGCAATCAAAATTAGAAGATCATGAAAATATGCATTTACCTCCAGAAAAACGAAAATGGTATGCATGTCCACAGTGTGGTAAGAAATTTGCAGTGCAAACTTCAATTCAGTCTCACATTAGAGCGGTTCATGTACGTGAAAAAACCTTTATTTGCGAAGAATGTGGTAAAGCTTTTGTAACAAGTGATCAACTCAATTCACATAAGGTTGTTCATTCAGATTTCACACCGTTCAAGTGCCCAAAGTGCccaaaatcatttaaaagactgccatcattaaaaaatcacattgatTCACATGAAGATACGAAATATATTTGTCCGATATGTGGGTGCCAACTGAACACTAAAACAATATTACGACGACATATGGTTATACATTCtgacgaaaaaaaatataaatgtaatttttgtcaaaaagaATTTAAGAGAACAAAAGCATTAAAGAACCATTTAATATTACACACTGGCTTAAAACCGTATGAATGTCCATTTTGTGATCAAACGTTTGCTAATGGTTCAAATTGcagaaaacatcaaaaaaattcaCATCCGGCAGAATTAGCTGCAATGGAACAAAGTGGAGAAAAAAAAGCATGTAAAAATGTACCACGTTTAGAACATTTAAAAGCTGTTAATAATGCTGCGGTTATCAATTCAAATGATGGTATAAATCAAAAAACTCAAAACATTTCCAATCAAGAcaacaaattttgtatgaatattccAAATGAGACCAATTTTAGTACTGCTACTGCATTTGAAGGAGAATCTCAGAGTCAGTTACCACTTAATGCAATTGTATCCGATAATTTAAGTCTTAATCcaaagattgaaataaaaactaaaactgttTTACAATCAGAAAGTTATatcagctcagaagaaatttcTTCCGAATAtcaaaattag
Protein Sequence: MRTKHNIVQKTQAVICKICGKTFKKQSKLEDHENMHLPPEKRKWYACPQCGKKFAVQTSIQSHIRAVHVREKTFICEECGKAFVTSDQLNSHKVVHSDFTPFKCPKCPKSFKRLPSLKNHIDSHEDTKYICPICGCQLNTKTILRRHMVIHSDEKKYKCNFCQKEFKRTKALKNHLILHTGLKPYECPFCDQTFANGSNCRKHQKNSHPAELAAMEQSGEKKACKNVPRLEHLKAVNNAAVINSNDGINQKTQNISNQDNKFCMNIPNETNFSTATAFEGESQSQLPLNAIVSDNLSLNPKIEIKTKTVLQSESYISSEEISSEYQN

Sequence clustering based on sequence similarity using MMseqs2