Basic Information

Insect: Argynnis bischoffii
Gene Symbol: -
Assembly: GCA_033884665.1
Location: CM066618.1:9502063-9509759[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 2.9 2.4e+02 3.1 0.4 3 9 213 219 211 221 0.88

2 6 5.5e-06 0.00046 21.1 1.0 1 23 236 258 236 258 0.99

3 6 0.0014 0.11 13.6 0.1 1 23 264 286 264 286 0.98

4 6 5.4e-05 0.0046 18.0 2.1 1 23 292 314 292 314 0.98

5 6 6.1e-06 0.00052 21.0 4.2 1 23 320 342 320 342 0.99

6 6 0.091 7.7 7.8 5.4 1 20 348 367 348 371 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	2.9	2.4e+02	3.1	0.4	3	9	213	219	211	221	0.88
2	6	5.5e-06	0.00046	21.1	1.0	1	23	236	258	236	258	0.99
3	6	0.0014	0.11	13.6	0.1	1	23	264	286	264	286	0.98
4	6	5.4e-05	0.0046	18.0	2.1	1	23	292	314	292	314	0.98
5	6	6.1e-06	0.00052	21.0	4.2	1	23	320	342	320	342	0.99
6	6	0.091	7.7	7.8	5.4	1	20	348	367	348	371	0.89

Sequence Information

Coding Sequence: atgaatgtttGCAGAATATGTTTagctaataacataaataaactttCTATATACGAAACAGAACAAGGAATATCTTATTATTCAATGTTAATTTTCGTTGCAAACATTAAGAAGatCATGAAAGACTCATGTGAATATATTTGTCTAGCATGTTGTAAAAAACTTAgagatttatataattttaaattattaattgagagATCTGAGTTGCAATTAAATCAATATTCaaacatatttaagtttaataacaTACATGAAATAAAAGTCAATATCAGTAAATTTAATAGCAAACCAAAGAATCTGAAAActgaatttaaaaagttttgccAAAATGGAGAAAGTTATGcatcttataataatacttttataaagaGAATCAAATTTGAGTCAGAAAAACCTAAGGTATTAGATAGAGAGCAATGCAATgattatAATAGTCATTCTACATTTCATTGTAAAGAGAGAGATAATTATGATGAAAATATCAAAACCGAACATAaagAAATCGTTTTAGataacagaaaatataatgtttgcATAAAACCAACATACTTGAAGGATGTAAGAGTTATGAAAACATCCACCACAAAAAATGTAGGCAAAAGTAAGCCAATTTATAGAAACAGGGAAGATATATGTCCATATTGTGGGAAAAGAATGAAAATTATAAGGAAACACTTGCTATTGCACACTGCTGAAAGaaaattcaaatgtaatgaGTGCCCGAGGTCTTTTTATGCAAAAAAAGATTTAGAAAGTCACATTAAATCTCACTATAAGGAGCCGGCTTTTAAATGTGACAATTGTATTGCAGTCTTTCAAACTAAAGCAGCACTTGCAAGGCACATGCTGATACACACAAatgtaaaagattttaaatgtcACATTTGTAGTAAAGCCTTTAAATGGAAAAATGGACTACTTCGTCACATGCAGAttcataatatttcaagagaatttaaatgtgaaatatgTGAGATGTCgttttccaataaatatagtttcCAACATCACACTCGAGTGCACACTGGAGAACGCCCTTATAGATGTGAGCTCTGTTCACGGCCATATAGTTACAAGCGGGATTTCAACAAGCATTGTCTGAAGAAGCACGGTGTAGTCATAGACCGGCGACCGGTACGTGTAATGAACGATCAGGTTCTTCAAAAAGAAAAGGCCTTAATGAAAAATCTAATGCTAAAATTACACGGAATACCAACAGAAAACGACCCCCGCGATTCTTTCAAAGGACCTCAAGGCGCGCAAGCCCTCACTAAAGTACTTAAACTTTTGCAAACTTGCCCATTACAAATAGATATAAAATTAACGCGAACGTTGCTTCAGAAATATACCGCAATTCTGGTtaccatatatttattaattccaACATTCGCTTTCAAGAAAACATCTAATGTAGATGAGTTTATGGTAGAGAATCAGAGAACGCGAATGAAGCAAAATTATGTTCTTCAAAGAGCTTTAAACAATGACGTGGACAATGAAAAAATAGGTGTTACATACGTCACGGAACCTTTCAACCCGAACACTAACCTTGAGTTACCAGAGCTCATGGTGGATTATGCCAATATGATaagaaatatcattttattgGATAACTCCGTCGAAACAAGAACTCAGAAAAGAggaaatataaaagtagaaaagTATGACGACGGCGAATTCAAAGATATACCATGCAGTTGTGAACAAGAAAGCaaAGATGCAAAGATATTGGGCGAAGACTACTTTCCTCCCGCGATAGAAACTAGGAACTGCGACGAACGACTCTGTCCTTCTCCTTACGGTTGCAGGAAGCGTTATcataatGTAACTGTGTTAAAGCGCAAGAGGTACATTGAAGAACCTTCTCAAGAGGTATTGCCTGAAGACCTAAAAAAACGGTGGATAGCCATTAAGCAACCTGTCATTGTAGGTTGTATGTGTGTAAAGGACTATTGA
Protein Sequence: MNVCRICLANNINKLSIYETEQGISYYSMLIFVANIKKIMKDSCEYICLACCKKLRDLYNFKLLIERSELQLNQYSNIFKFNNIHEIKVNISKFNSKPKNLKTEFKKFCQNGESYASYNNTFIKRIKFESEKPKVLDREQCNDYNSHSTFHCKERDNYDENIKTEHKEIVLDNRKYNVCIKPTYLKDVRVMKTSTTKNVGKSKPIYRNREDICPYCGKRMKIIRKHLLLHTAERKFKCNECPRSFYAKKDLESHIKSHYKEPAFKCDNCIAVFQTKAALARHMLIHTNVKDFKCHICSKAFKWKNGLLRHMQIHNISREFKCEICEMSFSNKYSFQHHTRVHTGERPYRCELCSRPYSYKRDFNKHCLKKHGVVIDRRPVRVMNDQVLQKEKALMKNLMLKLHGIPTENDPRDSFKGPQGAQALTKVLKLLQTCPLQIDIKLTRTLLQKYTAILVTIYLLIPTFAFKKTSNVDEFMVENQRTRMKQNYVLQRALNNDVDNEKIGVTYVTEPFNPNTNLELPELMVDYANMIRNIILLDNSVETRTQKRGNIKVEKYDDGEFKDIPCSCEQESKDAKILGEDYFPPAIETRNCDERLCPSPYGCRKRYHNVTVLKRKRYIEEPSQEVLPEDLKKRWIAIKQPVIVGCMCVKDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -