Abis022811.1
Basic Information
- Insect
- Argynnis bischoffii
- Gene Symbol
- -
- Assembly
- GCA_033884665.1
- Location
- CM066636.1:4174948-4193583[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2 99 4.4 0.5 1 23 239 261 239 261 0.93 2 15 0.18 15 6.9 1.8 1 19 311 329 311 330 0.94 3 15 4.6 3.9e+02 2.5 0.2 1 9 351 359 351 374 0.69 4 15 0.16 14 7.1 2.2 2 20 412 430 412 430 0.94 5 15 8.9 7.5e+02 1.6 1.0 1 8 438 445 438 460 0.81 6 15 1.1 96 4.4 1.9 1 23 751 773 751 773 0.91 7 15 0.018 1.5 10.1 1.3 2 23 779 800 778 800 0.96 8 15 7.2 6e+02 1.9 2.4 1 23 821 842 821 842 0.83 9 15 0.00019 0.016 16.3 1.2 3 23 887 907 886 907 0.94 10 15 0.011 0.97 10.7 2.3 2 23 923 944 922 944 0.96 11 15 7e-07 6e-05 23.9 1.8 1 23 950 972 950 972 0.99 12 15 0.00019 0.016 16.3 2.3 2 23 978 999 977 999 0.96 13 15 0.0059 0.49 11.6 0.4 2 21 1006 1025 1005 1026 0.93 14 15 0.98 83 4.6 1.0 1 20 1031 1050 1031 1054 0.93 15 15 0.0038 0.32 12.2 0.5 3 23 1063 1084 1062 1084 0.95
Sequence Information
- Coding Sequence
- atggaagaaaacaataaaaaacgaAGTAGAAAAACTAAATTAGTGCCGCGGCAGTACTTAGATTCCGATGACGAAAACATAGCTGTTATGCAGcaAGAAATTGAAGCGGAGTTAGCAAATTTAAAAGCGCAGTCGCTATTGAAAAAATTGAGCTCCAGCAGTTCTCAACCTAAAACAGACGAACAGTTTTCCGTTAAAGTTGAAATCGAAGAATATGATGAAGAATTGACTGATGAAGAAATCTTTTCTTTGACTTGCAATGATCCTGACTCTGAAAAAGACGAGAAAGTAATGTCTCTTGATCCCACAATAGCAAATCCagaaaatactattataaaaaccGAATGTGCAGACATAGAAACAGTGAAAAATGGTCAAGAATTGCTAAAGGACTGCAAAAGTGATAGAGATGACAAAGTTGTGCAAGACATGAACATAAGAATCGAATCAGTTAGAAGTCTTCAAAACGTTGATAAAATAGAAGTTTCATGctataaaatgacaaaaattatgattaaaaaagaatttgaaATCTTCTCAAAAACTACAGTAAGTTACACTGACAAATTACTTGAAATccatataaggaattattttgGACAAGATATCTCTGAAGTTAAACTTAATCAAACGGAAATAAAGATACAGGAAGTTATAACGAAATGGGGAACATGGATGACCTGTGATCCGTTAATTCGAGACACACCATTAATGTACATTTGTTCCATTTGTGAAAAGGCATGGTGGTATTTACATGATTTGAAGGAACATATAAAATACCATGGTAAATTTGGTATCACTTTTTATACTCTAGGTCATAATAGTTATATtgttgttactaataaaagaaaaatgaggGATTGTGGGGTACCCATAAAAAGGTACTGTTGGAGATGCGGTAAAGGTGTTTCGCATCACAGCCACAAGTCCTTTAAATGTGATGGCTGCGAGGAATCTTTTCATACATGTTTACTTTTAACCATGCATGAAGGGGATTGTAAAGGGAACAGGAAGTTTTATCAAAGAGCCTCCAATAATACATATCTAGAATTTAAATGTCCGGTTTGTCCTTGGAAACACTGGAAAGAGGAAGAACTGTTACGACATCAGGTCGGACTTCATTCAGTCAGATCAGATCTCCCCATGCCTTTTAAACCCAAGAGGTGCGGGAGTTGTAACAAATTTCTCAGCCATTACAATGCACATGATTGTATAGCCAAGCTTTTTAAGGAGTCCTGTAAGTTTTGTTTTAGAAAGTTCCAGAACAAATCAAGCTTGTTGTTACATTATTGGGTGTCAcctaacaattattttaaatgtagagTCTGcggaaaacttttaaaaaaggaATGTGCTGAGTTTGAGCATCTATTGGAGCATACAGACAACTATAAAATGTTGTATATGTGTTTGGTATGCAAAGATACACTATGTTTTTTTGATTTGCACTCGGTAAAGAACCACGAAACTTCTTGTcatgtaaataaagtaaaaacagaTGGAGATTACTGTCcgGTAGTGGTACCTAAGAGTCTTCTACAAAGGCTGGAACCAATGAAAGTGTTTGTAACGACCCCTgaagatatatatatagatagaaatgATACAACGCATGAAGACCAAGAAGACCAAGATGTTGATAGCGCATTCCAAGGCCTTTTGGGACATTTAGatataataaaaaaaataaaaattgaaaatacagAAGATATAAACAATAGTAATATGAATACTTTACAAGCGTATAATTATGAGGGTGACTTGCACGTTAACAATAATAACGATGGTCCGGATAAGAAATTAAGTACTTATAGCCGGACTAGaagcaaaaaaaatttacaatcaaCAGATGTTGGAGATGGTATAAAAGAATACGTAACCACAGATGTGGTAAAAATCAAAGAAGAGCCCATGAATATTGATGAGATTAACGGGATTAATGAAGTTAACGATATTGacttaattgataataataaaaacaacaatattaatataaataacgataTGAATGATGTTATTCTAAATTCGGTGTTACAAGAAATAGATGACATTAATATACcaattaaattagaaataaaggAGGAATGTGATGATATGTACAAAGatgatataatacttttgaatgAAAACGTTTTAAAACCAACAAAGCCacgtaaaaaaaaactgccAAAGTCAAAaagaGTATACAATTTTTCCAAAACAAAAGTAATGGATAAATATATGATGATGATATACAATGATGAATCCCGTTACTTGTGCACAAAATGCAACACAGTGtatatttcattcaaaaaatatataatgcatTTCGTTAAACATGATTATGAACCGTTAACATGCCCAAAATGTATGAAGCGAACGAGCAACGAACAACAATTTTGGAGTCATATGAATTACCATATAAAATCTAGTTTTGTTCGTGTGCATACCATAGCAAATGATTCATCGGATCAAAGTAGTTTCCAGTGTAAAAAGTGTCATCTAGTACTCGGTTATGATGATTTCTTCAAGCATTGGGAAGATCATCTGGATATTCAATCCGTTGATGTGATGACACAATTCAGTGTAAACATGGATGGGAAGCCCAAGTTGAAGGAGATGATcatgCTTTTGAGAGATCCAGAGAAAATCAGCCTATCACAATGGAAGACTAGAGCGTGTAACGAATGCGACAAACGTTTCGAAAGGAAAAACGATTACAAGCGGCATTTCATAGAACATCTACTGAGAGATGCTCTCACAGAGaaatataaatatggctgtttgAAATGTCAGATCTGTGGTCATGAGAGCAATTCAAGTGATCGATATAAACGTCATCTGCGCGACCACGCCTCGCTGCCAGTGTACAAGTGCGATTTGTGTGACAAAGCCTTCAGTGACTCGAGCAACTTTTCAAAACACAAGAAAGTCCACAATCTCTCCGTTCTCATATGCCATATATGCCAGAAGAAGTTCCAAAAGAAAGAGTATCTCATCAAACACTTGGAGATGCACGAAGTGACAAAACCGATCGTGTGTGAAAcatgtaacaaaatattctaCTCACAGTCTGTTTATTCGAAGCATTTGAAAAAGAACCGCCCACGTTTTAGATGTCACGTGTGTGTGACCTTTTATAGTACTTTAAGGGAGAAGTGGGACCATATGTGGCAGGTACATAAAGAAAGGAAGCACGTAGCGGATTGTCCGTTTTGTGAACAATCATACAGAAAGTATTCGGATGTGAAGAAACACATCAAAGATGAGCATGATAACGcgtatcataaatattataataaatctggGAAAATATTGTTCAAAGAGAAAAGTGATGATGAAATGTGTGTTGAAtga
- Protein Sequence
- MEENNKKRSRKTKLVPRQYLDSDDENIAVMQQEIEAELANLKAQSLLKKLSSSSSQPKTDEQFSVKVEIEEYDEELTDEEIFSLTCNDPDSEKDEKVMSLDPTIANPENTIIKTECADIETVKNGQELLKDCKSDRDDKVVQDMNIRIESVRSLQNVDKIEVSCYKMTKIMIKKEFEIFSKTTVSYTDKLLEIHIRNYFGQDISEVKLNQTEIKIQEVITKWGTWMTCDPLIRDTPLMYICSICEKAWWYLHDLKEHIKYHGKFGITFYTLGHNSYIVVTNKRKMRDCGVPIKRYCWRCGKGVSHHSHKSFKCDGCEESFHTCLLLTMHEGDCKGNRKFYQRASNNTYLEFKCPVCPWKHWKEEELLRHQVGLHSVRSDLPMPFKPKRCGSCNKFLSHYNAHDCIAKLFKESCKFCFRKFQNKSSLLLHYWVSPNNYFKCRVCGKLLKKECAEFEHLLEHTDNYKMLYMCLVCKDTLCFFDLHSVKNHETSCHVNKVKTDGDYCPVVVPKSLLQRLEPMKVFVTTPEDIYIDRNDTTHEDQEDQDVDSAFQGLLGHLDIIKKIKIENTEDINNSNMNTLQAYNYEGDLHVNNNNDGPDKKLSTYSRTRSKKNLQSTDVGDGIKEYVTTDVVKIKEEPMNIDEINGINEVNDIDLIDNNKNNNININNDMNDVILNSVLQEIDDINIPIKLEIKEECDDMYKDDIILLNENVLKPTKPRKKKLPKSKRVYNFSKTKVMDKYMMMIYNDESRYLCTKCNTVYISFKKYIMHFVKHDYEPLTCPKCMKRTSNEQQFWSHMNYHIKSSFVRVHTIANDSSDQSSFQCKKCHLVLGYDDFFKHWEDHLDIQSVDVMTQFSVNMDGKPKLKEMIMLLRDPEKISLSQWKTRACNECDKRFERKNDYKRHFIEHLLRDALTEKYKYGCLKCQICGHESNSSDRYKRHLRDHASLPVYKCDLCDKAFSDSSNFSKHKKVHNLSVLICHICQKKFQKKEYLIKHLEMHEVTKPIVCETCNKIFYSQSVYSKHLKKNRPRFRCHVCVTFYSTLREKWDHMWQVHKERKHVADCPFCEQSYRKYSDVKKHIKDEHDNAYHKYYNKSGKILFKEKSDDEMCVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -