Abis022605.1
Basic Information
- Insect
- Argynnis bischoffii
- Gene Symbol
- -
- Assembly
- GCA_033884665.1
- Location
- CM066636.1:2677626-2688883[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.24 21 6.5 0.2 1 23 217 240 217 240 0.91 2 11 5.1 4.3e+02 2.4 0.5 2 23 248 268 247 268 0.84 3 11 1.4 1.2e+02 4.2 0.4 1 23 272 295 272 295 0.82 4 11 0.00073 0.062 14.4 2.1 1 23 335 358 335 358 0.98 5 11 4.9e-06 0.00041 21.3 1.5 1 23 362 384 362 384 0.97 6 11 0.048 4.1 8.7 1.4 2 23 392 412 391 412 0.96 7 11 0.58 49 5.3 0.0 3 21 420 438 419 439 0.89 8 11 0.0054 0.46 11.7 0.5 2 23 451 473 450 473 0.94 9 11 0.00013 0.011 16.8 2.2 1 23 479 502 479 502 0.98 10 11 0.001 0.087 14.0 1.0 1 23 514 536 514 536 0.93 11 11 5.7e-05 0.0048 17.9 3.1 1 23 542 565 542 565 0.96
Sequence Information
- Coding Sequence
- atgacATCTTTAGTAAACGTGTTGAGAGACATTTGCTGTGCCTGTTTAAGTGTTGATAGAAAACTAACACGGTTATGTGATGTTGACGATGGTGTAAACAACTTGTTTTTCTTGGTTTCCTGTGACTCTGAAGCTTATGAGGTACTAAGTGGCAAAGGAGCTGACAATTTGCACATTTGTTGGGAATGTAAGGCTTTGATGCATCGTCTATGTAAATTTAGGGACCAGGCTTGCTTAGCTCAAAAGAACCTCTATGGTACTATTAAGGATATCCATAAACATAAGTGTTTGTCGCAATTATCAACATATTTTCAATCAGACTACAATGAATGTATAACCAACGAAGATACCGCAGATAACATAGAAGCTACAGAAAATACCACAGATAATGAACAATTAGTATATATAGAAAGTGACTGTGATACAGAATTTATTCTCTCCGATATAGAATCTGATGTAGACAAGTTAGATGAAGAAatagaaaaagataaaattgaaaCAACAAAAGAAATCCAAGATCCGTACGATTTAgtcaatgaaataattattgatgATAATGTCAATTTCACAACAATTAAAATGACTAAAATGGAGATGTTAGATAGTTTGGAGCAAAGGAAATGTGTTGAAAGTTTTCTTGAAGCGGAGTTCAAATGTGAGTGGTGTGTTGAAGTGTATAAAGATGAAATGGAACGACATGTGCATATAAGTGAGGCTCATGCAaaaAAACCGAACCACACGAAATGCGACATATGCACGACGTACGTCAGGGAGCGATGGTTCGCGGAGCACAGGAGGGATCACTACCTCAAGTTCCAGTGTCACCTCTGTGACTTCGTCGCGTACAACCTGTTGGTTATATTGAGGCATTTGAAAATCGGTCATGCTGTTCGGAATTTGCCCGGTCAAATGAAAAAGTTGCGGAAGCGGTCGTACCTCAAGAACCCCGGGCTGCGGCCGTGGGCGGCGGACGTGGCGCCCGACACGGAGACCACGCTCGGGTACAAGTGCTCCAAGTGCGACGAGGTGTTCGAAACAAGGAACAAGAGGTCTCTGCACATGCAGCGGTCACACAAAGACGGATACAAATGTTCAGTTTGTGGCAAAACTTTTGCTGGATCGTACAGTTTGAAGAATCATGAACACATCCACACGGGCACCATGCCCAAGCAGGTCTGCCCGACGTGCGGCAAGGCGGTGCGCCACGACACGCTGGCGTGCCACATGCGCGTGCACGCGCAGCGGCAGGCCGCCGAGTGCGCGCCCTGCGGCGTGACCTTCGTGAGCGACGCCGGCTACCGCAGGCACCTGCGCTTCAGCCGGCGGCATGGCGGCGACGCCTTCAGAATACGATGTCCGATTTGCCTGAAAGGGTTCAGGACGAAAATGGACAGACGTGATCATGTAAACTACACGCACAGAGGCATCACCATACATAAGTGTTCTATCTGTGAGAAGGTGATGTCGTCGGAGCGACTTCTGAAGCGCCATCTTAGGACCATGCATTTGGGGGAGAAGAAGGACGTCTACAAACGAACGTATTTGTGTCCCGTTTGTGGGCACGTGTGTCGGGATAGCACAGCGCTAAGAGAACACGAGTCTCTACACACCGGTGTATTGACATTCACGTGTGAACTGTGCGATAAGAAGTTCAGGACTTGTAGTACTCTGAATGGACATAAACGAGCCGTACACAAAGTAGTGCCTAAGCTAAAACTGGTGAAACACATCGAAATGGATAGCGGTGGGGTGGAAGAGTAG
- Protein Sequence
- MTSLVNVLRDICCACLSVDRKLTRLCDVDDGVNNLFFLVSCDSEAYEVLSGKGADNLHICWECKALMHRLCKFRDQACLAQKNLYGTIKDIHKHKCLSQLSTYFQSDYNECITNEDTADNIEATENTTDNEQLVYIESDCDTEFILSDIESDVDKLDEEIEKDKIETTKEIQDPYDLVNEIIIDDNVNFTTIKMTKMEMLDSLEQRKCVESFLEAEFKCEWCVEVYKDEMERHVHISEAHAKKPNHTKCDICTTYVRERWFAEHRRDHYLKFQCHLCDFVAYNLLVILRHLKIGHAVRNLPGQMKKLRKRSYLKNPGLRPWAADVAPDTETTLGYKCSKCDEVFETRNKRSLHMQRSHKDGYKCSVCGKTFAGSYSLKNHEHIHTGTMPKQVCPTCGKAVRHDTLACHMRVHAQRQAAECAPCGVTFVSDAGYRRHLRFSRRHGGDAFRIRCPICLKGFRTKMDRRDHVNYTHRGITIHKCSICEKVMSSERLLKRHLRTMHLGEKKDVYKRTYLCPVCGHVCRDSTALREHESLHTGVLTFTCELCDKKFRTCSTLNGHKRAVHKVVPKLKLVKHIEMDSGGVEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00248178; iTF_00247545; iTF_00248479;
- 90% Identity
- -
- 80% Identity
- -