Basic Information

Insect: Argynnis bischoffii
Gene Symbol: -
Assembly: GCA_033884665.1
Location: CM066630.1:6085255-6098071[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.5e-06 0.00021 22.2 1.8 1 23 255 277 255 277 0.98

2 12 0.13 11 7.3 2.1 1 23 285 308 285 308 0.94

3 12 0.00027 0.022 15.8 2.3 1 23 402 424 402 424 0.99

4 12 3.5 3e+02 2.9 3.8 2 23 433 455 432 455 0.95

5 12 0.0098 0.83 10.9 1.8 1 23 459 481 459 481 0.97

6 12 0.00058 0.049 14.8 2.0 1 23 486 509 486 509 0.97

7 12 0.037 3.1 9.1 2.1 3 23 515 536 514 536 0.95

8 12 0.35 29 6.0 0.1 2 20 555 573 554 575 0.93

9 12 4.1 3.5e+02 2.6 0.3 3 22 624 643 622 645 0.83

10 12 5.6e-06 0.00048 21.1 1.1 1 23 654 676 654 676 0.98

11 12 0.00059 0.05 14.7 0.3 1 23 682 704 682 704 0.96

12 12 1.4e-05 0.0012 19.8 2.9 1 23 710 733 710 733 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.5e-06	0.00021	22.2	1.8	1	23	255	277	255	277	0.98
2	12	0.13	11	7.3	2.1	1	23	285	308	285	308	0.94
3	12	0.00027	0.022	15.8	2.3	1	23	402	424	402	424	0.99
4	12	3.5	3e+02	2.9	3.8	2	23	433	455	432	455	0.95
5	12	0.0098	0.83	10.9	1.8	1	23	459	481	459	481	0.97
6	12	0.00058	0.049	14.8	2.0	1	23	486	509	486	509	0.97
7	12	0.037	3.1	9.1	2.1	3	23	515	536	514	536	0.95
8	12	0.35	29	6.0	0.1	2	20	555	573	554	575	0.93
9	12	4.1	3.5e+02	2.6	0.3	3	22	624	643	622	645	0.83
10	12	5.6e-06	0.00048	21.1	1.1	1	23	654	676	654	676	0.98
11	12	0.00059	0.05	14.7	0.3	1	23	682	704	682	704	0.96
12	12	1.4e-05	0.0012	19.8	2.9	1	23	710	733	710	733	0.98

Sequence Information

Coding Sequence: ATGTTTGACTTAAAGGCATGTACGGTATGCttaaaaacaaatgttaaaatttataatttaaattcagaTCAATTAAGACACGAGTATAATTTAGTGTCAGGTTTAATGACATATAGTCAAAATGGCTTGCCTGAATATTTATGTTATCAATGCATGGCCCATGTaagaaattttaagaaatttcgTGATAAATGTCAACATTCATATTATGCACTGCGAGAAGTATTTGAGAgagaaaaaaagataactGAATCAGTGGTTGAAGAGTTGAgtcataatgtaataaatattgaacCAAATCTTTCCTATCTGGCACTGGACCATTATAGAACGAAGTATGAATATGTTCGATCTAAAACAAAGAAACATCGAAATGCTGACTTGAAGGTTTATGACAATATACCCATCCTACAATTCACTACAACTTCTGATGAAGTAATATTTGAAGTGCCTAAGAAAAACTCAGAACTATGGGTGGACCTGGAAGACAGTATAAAGCAGGAGGATGATTCTCTTATAAAACATGATGAAACTTATGTGGCTGATTTAACTGAACTGTATGATAAAAAAGATGATGACTACTTTGATGAGTTTGATGATTGTGATACGCAGAATGAATTTGATAACGACCTGGAAAAGTTAGATGGTCAAGCTGAAACTAATGGCAAGAATCATCAGGAAGAATATGCAACATTAATTCCTATAAACACTAAAGAAGCCAAGGCTGCAGTTGAAGTGTATAAAATGCTTTTCCAAGGAAAGTTTTCATGTGAAGTGTGTCAAAAGACCTATAATAGTCAGTATAGGCTTAAAGCTCACATGAGAATGCATgatatgTGTGTTAGTGGCACATTTTCATGTTCATTGTGCAAATTTTACTACAGATCtgaattactattaaaatcGCATATGACAGAAAAGCACATGTACAAGTATTTATGTAAAAAGTGCCCCGAGGTGAACTTTGACAGACATTCAGCCAAGCGACATTACTATTGGGGGCACTTCACAGAAATATCACAAAAACATACACGCACAACCAGACTAACAAAGGGTAGACGGAAGCACAAATCTGCAATACGACAATTAGAACCTAAGACTGGAGATCCAGATGACTTCCCAATATTATCTGCCGTCACTCAAGAGGAACAATATGCCTTAATAAGGGATCGacagaaaactaaaaactatatgGACTCGCCCTACAAATGTGAATATTGCTTCAAAGGTTTCAGAGTTGCTACAACATATGAGACACATTTGAAAAAACATGATccaGCAATCTCGGGTGAGCTCCAATGCGACGCCTGTAAGACATACTGCCCAAACCCTGCTAAGATGTATAAGCACATGACCCGGTGTCACATATACAAGTATACATGCCAAATGTGCGGATATGTCTGCTTTAACAGAGGTCAAGCGAAAATACATTACAACTGGCACAAGAAAGTCATATATCCATGTCCTCATTGCAAGAAGGAATTCtcAAAAGAATCAACGAAGCTGGGTCACATTCGCAAAATGCATCCATCGACAAATATTTGCAACTTGTGTGGTCACAGCTTTGTCAGTGTCACCGGCCTTCATATACACAAACTCAAGACTCATAGCAAAGAGGAGGTAGAAGAAAACCCCGGCAAGGTAGATCCGAACAACCCTTTGTACTGCGCTGAATGTCGCGTACAGTTCAGAGACGAAGAGGCCTTTAATACCCACCTAGGATCTTCCAATAAACATGCTGAGACTAATCGatCAATGATCCAAGCGAACATAGAGAGCGCGTACGACACGAAGGGCGCGGGCGTGCGCGAGGGCCCGCGCCTCACCGACAAGGGCGTCGTCAACATGGGGCGCGCCACCTCCTCCAACTGCGAGATTTGCAACAAGTACCTGCAGAACGACACGCAGGCGACGCGCCACTACGACGCGGAGCACCCCGGCGCGCCCTACCTCAAGCGCTACATGTGCGACATCTGCGGGCACAAGACGCGCcaATATGCCAACTTGGTGGTCCACATGCGGACGCACACGCAGGAGAAACCCTACGCGTGTCCGCAGTGCGATCGGCGCTTTAGTATGCAGAACAACCGGGATAGGCATATTGTTGTACATACTGGTGAAAAGCGATACCAATGCCCGCATTGCAGCCGTCGCTTCTCTCAAAAGAACACAGTCAAACTCCACATACAGACTGTGCACTTGAAGATCCCCTACCCACCCTGGAATAAGAAAAACCGTAAACCTCGCAGGGACCTAGACTCGGCGCCCCCCTCCCCCTCTACTAACTATAAACTACACCTCGAGGCCTCCCACGGTAACTACCTAAGCGCATATATTGACACAACAAATAAAGTTTGCGGTTCTCATTAA
Protein Sequence: MFDLKACTVCLKTNVKIYNLNSDQLRHEYNLVSGLMTYSQNGLPEYLCYQCMAHVRNFKKFRDKCQHSYYALREVFEREKKITESVVEELSHNVINIEPNLSYLALDHYRTKYEYVRSKTKKHRNADLKVYDNIPILQFTTTSDEVIFEVPKKNSELWVDLEDSIKQEDDSLIKHDETYVADLTELYDKKDDDYFDEFDDCDTQNEFDNDLEKLDGQAETNGKNHQEEYATLIPINTKEAKAAVEVYKMLFQGKFSCEVCQKTYNSQYRLKAHMRMHDMCVSGTFSCSLCKFYYRSELLLKSHMTEKHMYKYLCKKCPEVNFDRHSAKRHYYWGHFTEISQKHTRTTRLTKGRRKHKSAIRQLEPKTGDPDDFPILSAVTQEEQYALIRDRQKTKNYMDSPYKCEYCFKGFRVATTYETHLKKHDPAISGELQCDACKTYCPNPAKMYKHMTRCHIYKYTCQMCGYVCFNRGQAKIHYNWHKKVIYPCPHCKKEFSKESTKLGHIRKMHPSTNICNLCGHSFVSVTGLHIHKLKTHSKEEVEENPGKVDPNNPLYCAECRVQFRDEEAFNTHLGSSNKHAETNRSMIQANIESAYDTKGAGVREGPRLTDKGVVNMGRATSSNCEICNKYLQNDTQATRHYDAEHPGAPYLKRYMCDICGHKTRQYANLVVHMRTHTQEKPYACPQCDRRFSMQNNRDRHIVVHTGEKRYQCPHCSRRFSQKNTVKLHIQTVHLKIPYPPWNKKNRKPRRDLDSAPPSPSTNYKLHLEASHGNYLSAYIDTTNKVCGSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00780543;
90% Identity: iTF_00247522;
80% Identity: -