Basic Information

Insect: Argynnis bischoffii
Gene Symbol: -
Assembly: GCA_033884665.1
Location: CM066631.1:2028890-2034081[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00041 0.035 15.2 1.0 1 22 184 205 184 205 0.95

2 11 0.0015 0.13 13.5 2.9 1 23 241 263 241 263 0.97

3 11 0.088 7.5 7.9 0.2 1 23 269 291 269 291 0.83

4 11 1.5 1.3e+02 4.0 5.1 1 23 296 319 296 319 0.98

5 11 0.00037 0.031 15.4 0.3 1 23 325 347 325 347 0.99

6 11 0.011 0.92 10.8 3.1 1 23 353 376 353 376 0.94

7 11 0.058 4.9 8.5 1.4 2 23 386 408 385 408 0.94

8 11 0.00027 0.022 15.8 0.2 3 23 418 439 417 439 0.96

9 11 8.8e-06 0.00075 20.5 0.7 1 23 445 467 445 467 0.98

10 11 9.8e-08 8.3e-06 26.6 3.0 1 23 472 495 472 495 0.97

11 11 0.00057 0.048 14.8 2.2 1 21 500 520 500 521 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00041	0.035	15.2	1.0	1	22	184	205	184	205	0.95
2	11	0.0015	0.13	13.5	2.9	1	23	241	263	241	263	0.97
3	11	0.088	7.5	7.9	0.2	1	23	269	291	269	291	0.83
4	11	1.5	1.3e+02	4.0	5.1	1	23	296	319	296	319	0.98
5	11	0.00037	0.031	15.4	0.3	1	23	325	347	325	347	0.99
6	11	0.011	0.92	10.8	3.1	1	23	353	376	353	376	0.94
7	11	0.058	4.9	8.5	1.4	2	23	386	408	385	408	0.94
8	11	0.00027	0.022	15.8	0.2	3	23	418	439	417	439	0.96
9	11	8.8e-06	0.00075	20.5	0.7	1	23	445	467	445	467	0.98
10	11	9.8e-08	8.3e-06	26.6	3.0	1	23	472	495	472	495	0.97
11	11	0.00057	0.048	14.8	2.2	1	21	500	520	500	521	0.94

Sequence Information

Coding Sequence: atggAAAATACGTGCCGATTATGTTTACTGCAATCGCCGGAAATTGTTGAAGAATTATGGGAAGGATGCGATATTTTGGATAAGTTATCCGTTTCTTTATCTCATTACGTATCTTTAGCAGATGAATTGCCAAAAAACATATGCTATGATTGTATTAACAAAGTACacgatatttataaatttcatcaGACAATCAGccgaaatgaaattattttgcaaaaaaaattggataatattacatgtaataatttaaaaggtaatgcaataaaaaaagagaaTACATATGAAAATGATACAGACTATATAGATACTTTAGAAATAGATAAGCCAttagaagaaataaatataaaaactgaagtattttattgtaaagataAAGGTAATGAGTGTACTACAAGATACAAATCAAAtattgacaaaataaataattcaaatcaaattaaaacagaagtaattaaagaaaatttaacagaatctaaaaatattgtcattAGTATAGAAAAGCACGAGAAGCaaatagaagaaataaaatttgaagaatCAAAGCGATTTACATGCCTTACttgttttaaagtattttcCAACCAACTAGAGCTGTTAAGACATTATCAAACGGTGGAGTTGGAGAAATTTAACAAAAGtaatacaacaaataataaaaataatgaaaatgaacTAGTTACATATAAAGTTCAGGAGACAGACGATGGTGCTTTggtttataaatgtgaaagatgttataagaaatatagGAATAAAACTGATATTAAAAGGCATGTCGTAAGTCATGTTGAGACAAGaccatttttatgtaaattatgtggaaaaaccTATCAAACAGCATCAATAATTGTTGCTCATGGCAAAATGCATAGAGGTGAAATGTATAAGTGTTCATATAACTGTGGATACAGATCTGTTCACAAACATGTTGTTAAGGATCATGAAAAACGACATAGGAAAGAATATAAGTATAAGTGTGAAGCTTGCGGCAAAGGTTTCCAAGTGAAAACATGGTATGAACAACATCAAAACATACATAAAGGTGTTAAACCGTTCTCCTGTGAAATATGTGGCATGGCATTCCATTtacataaATATCTAACAACCCATCGTAGTAACGTACACCCGCAGTCGTCGGGACGCAAGCCGTGGATATGCAAACTCTGTTCACTGCCTTGTGACTCTAAAAACAgcttaaatttacatttaaagGAAAAGCATGGTGTAATTACTAAAAAATCAATACTCTGTGATATATGTGGCAAAGTGGTTCGAGACACGCAACAATTGAAACAACACAAAAGGGCTGTCCATTTACACATCAAACCGTATGTTTGTGGtgtttgtaacaaatcgTTTCCTAAGAAATTCACTTTAACAGTACACGAACAAACACACTCTGGGAAGCGCTACTCGTGTAACTTTTGCGATAAAATGTTTTCTAGAAAGAGTAGTCTACAAAGACATATTTTACGATTTCACACGGATTCAAAACATAAGTGTTACCAATGTGAAAAGTCGTTTACATCAAAAGTGAAACTTGCAACACATAAAAAAGTGTGTTCTGTAATTGTCAATCCACCAACCACAATTCAGGAAAATAACATAAAAGTTTAG
Protein Sequence: MENTCRLCLLQSPEIVEELWEGCDILDKLSVSLSHYVSLADELPKNICYDCINKVHDIYKFHQTISRNEIILQKKLDNITCNNLKGNAIKKENTYENDTDYIDTLEIDKPLEEINIKTEVFYCKDKGNECTTRYKSNIDKINNSNQIKTEVIKENLTESKNIVISIEKHEKQIEEIKFEESKRFTCLTCFKVFSNQLELLRHYQTVELEKFNKSNTTNNKNNENELVTYKVQETDDGALVYKCERCYKKYRNKTDIKRHVVSHVETRPFLCKLCGKTYQTASIIVAHGKMHRGEMYKCSYNCGYRSVHKHVVKDHEKRHRKEYKYKCEACGKGFQVKTWYEQHQNIHKGVKPFSCEICGMAFHLHKYLTTHRSNVHPQSSGRKPWICKLCSLPCDSKNSLNLHLKEKHGVITKKSILCDICGKVVRDTQQLKQHKRAVHLHIKPYVCGVCNKSFPKKFTLTVHEQTHSGKRYSCNFCDKMFSRKSSLQRHILRFHTDSKHKCYQCEKSFTSKVKLATHKKVCSVIVNPPTTIQENNIKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00723419; iTF_00247462; iTF_00248387;
90% Identity: iTF_00723419;
80% Identity: -