Abis008077.1
Basic Information
- Insect
- Argynnis bischoffii
- Gene Symbol
- -
- Assembly
- GCA_033884665.1
- Location
- CM066617.1:1172840-1174255[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00045 0.038 15.1 1.8 1 23 108 130 108 130 0.97 2 10 6.3 5.3e+02 2.1 0.8 3 23 157 178 155 183 0.91 3 10 7.9e-05 0.0067 17.5 1.3 2 23 200 221 200 221 0.95 4 10 0.052 4.4 8.6 2.1 2 23 226 247 225 247 0.96 5 10 4.4e-05 0.0037 18.3 1.5 1 23 254 277 254 277 0.95 6 10 0.019 1.6 10.0 1.3 1 23 283 306 283 306 0.94 7 10 0.0001 0.0084 17.2 2.5 1 23 312 335 312 335 0.97 8 10 3.4e-05 0.0028 18.6 1.7 1 23 341 363 341 363 0.98 9 10 3.5e-07 2.9e-05 24.9 0.7 1 23 369 391 369 391 0.98 10 10 3.6e-06 0.0003 21.7 0.9 1 23 397 420 397 420 0.98
Sequence Information
- Coding Sequence
- ATGACAATTTTCATAGCGAACTCTTTCGTAGTTAAGGTCGCAGCTGTTAACCCTAACGCCTTATCCCGACTGTTCTGTAAAAATACATATGGCAGTAGGGAGCGCCTTACTCTCACCTCTCATGAATGCCCTATTCAGAGGAGAGGACTCGTTAGTGATAACAATAAACTGAACCGAACACTGCCACAACTTCCCGAGCAGTCCACACAACCACACAAACAAAATGGCCTCAAAACCAATGAGAATAGTAAATCCTACCACAATTTCGTGACAATAGTAGAAAACTCATATGCTTGTCCATTTGATACATCTTTTAGTGATTTTTTCTGCGTCTACTGCAGACAAGTGTTCACAGACTCTAACAAACTTCGAGAACATTCTATGACACATGATCCAACTACCTTGAAAGATGTGCTATCAAATATACcgagtaacaaaaaattacaaattgatGTATACCGAATAGACTGTCGACTATGTTCAGAAAATATTgatgattttgaaaaattcaccgATCACATAAAAAATGTCCATCAAAAAACTTATCACAATAACTCTGACGACTTCCTCAAATATCGTCTGACTTCCGGTCCGCCATCTTGTACAGAATGCGGGGCAACGTTTAGTTTTTTTCATGCGCTAAAAAAGCATATGGCAGAACATTTTGGTACATGCATTTGTGATATGTGTGGGGCGCATTACTTCGAAGAACGAATGCTAATTCTCCATCAGAAGACTCACCAGAAGGTTGAAGAGAGTTTCGCGTGTAAAGAATGTGGTAAAAccttcaaatcaaaatatacaagATATATACACATAGCAAGGACCCACAAAAAAGAGGCTGCATATCAATGCAATAAATGCGATGAACTTTTCTTCTCTTACACCCTGCGATATCGGCACATGATAGAAGTACACGGAGAAGAAAGAATGTTTAAATGTGAAAAGTGCGATAGGGCTTATGACAGTCGAAAGTCTCTACGAGAGCACAACAGACGGTTtcacttaaaaattttaaaacatcaatGCGATATGTGCGACAAAAGATTCTACCTACCCTCTCGGTTGAAGGAACATATGGCAAGTCACACTGGGGAGAGAAACTTCAGATGTGAATACTGTGGGAAAACCTATCCCCGATTGAGAGGCCTAAAAGTGCACATGCAATCGCACAGcagtgaaaaaaaatttaaatgtgaatTGTGTAATGCATCTTTTGCCCagaaagtaaatttaaaaaatcatgtgAAACGGCAACACCAAAGTCTAGAGATGGAAGAGAGTTACAATgagtaa
- Protein Sequence
- MTIFIANSFVVKVAAVNPNALSRLFCKNTYGSRERLTLTSHECPIQRRGLVSDNNKLNRTLPQLPEQSTQPHKQNGLKTNENSKSYHNFVTIVENSYACPFDTSFSDFFCVYCRQVFTDSNKLREHSMTHDPTTLKDVLSNIPSNKKLQIDVYRIDCRLCSENIDDFEKFTDHIKNVHQKTYHNNSDDFLKYRLTSGPPSCTECGATFSFFHALKKHMAEHFGTCICDMCGAHYFEERMLILHQKTHQKVEESFACKECGKTFKSKYTRYIHIARTHKKEAAYQCNKCDELFFSYTLRYRHMIEVHGEERMFKCEKCDRAYDSRKSLREHNRRFHLKILKHQCDMCDKRFYLPSRLKEHMASHTGERNFRCEYCGKTYPRLRGLKVHMQSHSSEKKFKCELCNASFAQKVNLKNHVKRQHQSLEMEESYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212829;
- 90% Identity
- iTF_00723381;
- 80% Identity
- -