Abis008525.1
Basic Information
- Insect
- Argynnis bischoffii
- Gene Symbol
- -
- Assembly
- GCA_033884665.1
- Location
- CM066617.1:6494095-6499095[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 6.4 5.4e+02 2.0 0.1 2 16 73 87 73 89 0.80 2 28 7.3e-05 0.0062 17.6 1.7 1 21 162 182 162 183 0.96 3 28 0.041 3.5 8.9 3.2 1 23 216 239 216 239 0.96 4 28 0.6 50 5.3 0.1 3 23 246 266 244 266 0.91 5 28 0.027 2.3 9.5 2.1 3 22 271 290 270 290 0.94 6 28 0.011 0.94 10.7 0.8 2 23 334 356 333 356 0.95 7 28 0.0011 0.092 13.9 1.1 1 23 389 411 389 411 0.98 8 28 0.0011 0.091 13.9 0.5 1 23 417 440 417 440 0.97 9 28 0.007 0.59 11.4 1.2 2 23 450 472 449 472 0.96 10 28 0.22 18 6.7 7.7 1 23 482 504 482 504 0.98 11 28 0.0025 0.21 12.8 1.2 2 20 642 660 640 662 0.91 12 28 0.085 7.1 8.0 0.1 3 23 668 688 667 688 0.95 13 28 0.0076 0.65 11.2 1.2 3 23 695 716 694 716 0.94 14 28 0.00015 0.013 16.6 0.7 2 23 722 743 721 743 0.97 15 28 0.00021 0.018 16.2 1.3 1 23 779 802 779 802 0.93 16 28 0.1 8.6 7.7 3.4 1 23 808 830 808 830 0.95 17 28 3.8 3.2e+02 2.8 0.6 1 23 864 887 864 887 0.86 18 28 0.0038 0.32 12.2 0.8 3 23 894 915 893 915 0.91 19 28 0.0011 0.094 13.9 1.2 2 21 1025 1044 1024 1045 0.94 20 28 7 5.9e+02 1.9 0.2 3 23 1052 1073 1051 1073 0.94 21 28 1.1 92 4.5 3.5 1 23 1078 1101 1078 1101 0.94 22 28 0.00036 0.03 15.4 0.6 2 23 1107 1128 1106 1128 0.97 23 28 1.2 98 4.4 1.3 2 21 1132 1151 1132 1152 0.91 24 28 2.5e-05 0.0021 19.1 1.4 1 23 1178 1201 1178 1201 0.95 25 28 0.0016 0.13 13.4 0.4 1 23 1207 1229 1207 1229 0.92 26 28 0.12 10 7.5 0.1 1 23 1235 1257 1235 1257 0.97 27 28 0.0063 0.53 11.5 0.8 1 23 1263 1286 1263 1286 0.94 28 28 0.00032 0.027 15.6 1.9 2 23 1293 1315 1292 1315 0.95
Sequence Information
- Coding Sequence
- ATGACGCGGCAAGTAGACATAAAGGCTCTTGTATCGCATGTAGTTCGTGGAGATGGTGTAAATAAGTGCCGAATATGTATGGGCGATACTTCTGAAGGACAAGTCTATTTAAACGATACTGTAATGATGGATGGTGATAAACCTATAACACTATCCGAATTGCTGGAAACCATAACCGGCATCCAgGTGCAGATAGAAGGGGACTTACCTGATGGAGTGTGCCCAAAATGTTCCAAATCTGCTATAAATGCTGCTGAGTTCCGATCCTTATGTCAACAAGCAGCTCATCAGTGGGATATAACAATTACTCTACTACATGACCTCCCAACGCAATGCATgaataacaaaacaatatttgctATCATAGATAAAACGCAAATGATTGTTATTAATGATATGAAAAAATCATACAATATCACAACGGCTGCTCAACGGATAACAACTCATCTAGTCAAACCCACACTAGACAAAGAGGACAGCCATTATAAGTGTCCAAATTGTGAAAAAGAATTCACAAATGCATTTCAATTGTGTCAACATTTGAAAGAATCTCCAGATTTAAAACGAGCCTGTTACATATGTGGTAAAATCATGTCTCGTGACGATATACTGTATCACATGATAAATGAACATAAAGAAGTGCcttataattgtaaaaagtgCCCAGCACTATTTTGTTCTTATAGCCAATATATGCAACATTTAACAAAAGCACATTCAAATGGCCGTACTACTTGTATTGATTGTGGACGTAACTTTCAATCGCTCAATGCATATTATGCTCATGTCTCCATACATGCCTCTAAAAATTGCCCAGGATGTGACAAACTGTTTCGAAATCACTCTTGCTACATATATCATGTCAAAACTTGCTGTAATTTGGAACGCCCCAGAATAAATATGATGacaaccaaaaaaaaagttaccatagaggtaaaaaatgaaattagcaATCGCAAAGTTAAAGTAGGACTTCGTGGAGCTGCAAACAAAGAATGTATATGCGATTATTGTAAGAAAAAATTTGCTGGCAAGAAGTTTGTTGCTGCACACATTCAAATAGTACACATGAGGAACACTCACAGACCATGTATTTATTGTGGAAAGTTGCTGGCATCAGCGCATATGTCGGAACATATCAAAAGACATGAATCTGATCGGACTTATAAATGCCCACATTGTGGAGTgattttgaaaacaaaattgGGTTACAATCAACATTTGCGCCTTCATACTGGTGAAAGGCCATACGCTTGCAAGTATTGTGGAGAAACGTTTTCAGCTTCATCAAGACGCTCAGAGCATATTCGCAAAGTACATAAGAGCTCTGATATAGTTTTGAAACAGGAGTGCCACCTGTGTCCAGCAAAATTTAGGCTTCCCTATCGGTTAAAACAGCATCTAAAATCAATCCATAATGATGATCAAGATACTTTACCTAAGTTTGAATGCAATACATGTCACGAGAAGTTCGGTTCATGCAGAGGACTGCTGCATCACAGTCGGAAACATCAGAATGTAAACTTTCCATTAAAAAAACCAGAGAAATCCATAATGCTTAAGgaaGAGACGAAGGCTGATTGGTCTCCGTGGTTTCAGGTGGTGGATGAAACTGACCTCCCTGCTGGGTTGTGCTGCGTCTGCGCAGATAACGCCATTTCAACGTGGCAGTTCAGGCATTTATGCCATGAGTCGCACAAACATTGGATACAGATTTCCACAGTCCTGATGAGAACTGACATACCCACCACCAAAGATAAGACCTTCTTTATTAGCACCAATGGCACCTTACTAAGAGACTACATGAACAACATCCATACTTTGAAGGACGCTACGAAGAGATTGAACTTTTTAATCGGAAATACAAATAAAGTGCGCGcgaaatacaaaaagaaaaagtcGAAAGTAGCTGAAAGTAAATGCAAGTGTAGAGATTGTGGAAAAGAATTTGAATTGCCATATTTTTTGAATCGTCATTTGATAAATTCATCGAAACGCGCTTGTACTTTATGTGGCAAGGTTGTGTCTCGAGAAAAATTAGCGATACATTTGCAAAGGGTGCATCAACGATTTGTGGAATTTTGCAGCGTTTGCTATAAAGTTTTTGATGAAAAAGACCATTTAGATCGTCACAAAGAAATTTTACATGGGAATAGTTGTTTGCAATGCAAAATATGTAAACTCGGCTTCAAGAGTGAGAGATCTTTAAGCGCTCACATGTACACACATACATTATTCAACTGTTCCTCTTGCAACAGTAGCTTTGAAAATCGAAAATGCTACTTATACCACAGACACAATTGTAAAGGTTCGAAGTTTACAAAACAAGATGTTTATGAATGTCACGATTGCGGAAGTAAATATACAAGGAAACCGTCTCTTAGGGTCCACATAGTGCAAAAGCATTTAAATGTGTTGCCATATATCTGTCAAATTTGCGGGAAACGTAGCTCTTCGAAAACCCACCATCAATCCCATGAATTAATTCACAAAACTGAAAGAAAGATATACCAATGCTACTGCGGTGCAAAGATGAGAACAGTTCTCGGTTTCCACATGCACCAAAGGATACATTCTGGGGAAAAACCATATGAATGTCAGGAATGTGGAGATAAATTTCTATCGGCTTCTAGAAGATTGGATCacattaaaagaaaacatagaAGTAAAGACCACGGTTGTCTTGAGTGTGATGCGAGGTTTGTTAGGCCATcggaattaaaaaaacattgtcgTTTAGCGCACTTTGTACAAGAAGACCAATTGTTTCCGAGGGGCTTATGTATATCCTGCACAAGTGTAGCTGTGTCTGCTTCAGAATTCAGAATATTTGTAAACAAATCGCAACAACTATGGACCAATTGTGTTAATTCACTTCAAACACTTCCAACTTTAAACACATCACACAAATCCCTGTACGCCATCGTTAGAGAAAATTTGCTTTTGCAAACAGTCAATAACTTCGAAGGCAGTGCAAAAGACTTGATAGAGCATCTCGCCAATCGAATCGTAAAACGAAAGCCGTTGATAGTTGAGAGAAAACCTCGACATCCTCGCACTGGACCAGCTTGTAGTTGCACTGATTGTGGGAAAAGTTTTCTAAGTCCATATTACTTGAACATGCACTTACGCAACAGCGGCCAGAAAGAGGCGTGTTGGTTGTGCGGTGCCATGCTAATCAGAGGCCAAGAAATGAAGCAGCATCTCCACAAAATACACAAAACTGAAATGTTCCTGTGTACAGAATGCCCAATGCTGTTCAAAACCGACGTGGATAGGAAGCGCCACACCAAAAAGTGTCACGGCCCGGGTGTTATGACTTGTTCAGATTGTGGTCGGACATTCCAAAGGAGTGCATCCTATGATGTTCATACCCAAATGCACGCAGTACGAACTTGCAGAGCTTGTGGTGCACAGTTCACTAATCGTGGTTGCTACAGAGTGCACAGGTCGAAATGCGAGCCAGAAGCTAAACCAGATTTGAAGACGATACCAAGAAACAGGCGCTCAAATATTCGTGACCCGGCAACTTTCACTTGCGACTATTGTGGCAAGACTTACCATTCCAGACctcaattaaaaaatcatattttgtgGATCCACATGGATATAAGACCTCATCAGTGTCAATGGTGTGGGAAAAGGTTCTATACTCCAGCTCGATTAGCAGAACACTCTGTGGTTCATACTCGTGTCAGGAACTTTGAATGTGACATCTGTGGTGCGAAATTAGTGTCTAAAATGGCGGCGGTGTATCACAGGAGACGTCACACAGGGGAAAGACCCTATGAGTGTCAGGATTGTGGGGAAAAGTTCATCTCTTCATCCAGAAGATCAGAACATGCTAAACGGCGACACAACAAAGGCTCCCGTCTCCACTGTCCTGAGTGCCTTGCCAGCTTTGTAAGAAGTCATGAGTTGAAGAAACACATGGATAAAATCCATGGTGTAGACAATCATGTGGTTAAAATAAAGGACAAAGGTTTTGATATGTCAACGGCTGTATGA
- Protein Sequence
- MTRQVDIKALVSHVVRGDGVNKCRICMGDTSEGQVYLNDTVMMDGDKPITLSELLETITGIQVQIEGDLPDGVCPKCSKSAINAAEFRSLCQQAAHQWDITITLLHDLPTQCMNNKTIFAIIDKTQMIVINDMKKSYNITTAAQRITTHLVKPTLDKEDSHYKCPNCEKEFTNAFQLCQHLKESPDLKRACYICGKIMSRDDILYHMINEHKEVPYNCKKCPALFCSYSQYMQHLTKAHSNGRTTCIDCGRNFQSLNAYYAHVSIHASKNCPGCDKLFRNHSCYIYHVKTCCNLERPRINMMTTKKKVTIEVKNEISNRKVKVGLRGAANKECICDYCKKKFAGKKFVAAHIQIVHMRNTHRPCIYCGKLLASAHMSEHIKRHESDRTYKCPHCGVILKTKLGYNQHLRLHTGERPYACKYCGETFSASSRRSEHIRKVHKSSDIVLKQECHLCPAKFRLPYRLKQHLKSIHNDDQDTLPKFECNTCHEKFGSCRGLLHHSRKHQNVNFPLKKPEKSIMLKEETKADWSPWFQVVDETDLPAGLCCVCADNAISTWQFRHLCHESHKHWIQISTVLMRTDIPTTKDKTFFISTNGTLLRDYMNNIHTLKDATKRLNFLIGNTNKVRAKYKKKKSKVAESKCKCRDCGKEFELPYFLNRHLINSSKRACTLCGKVVSREKLAIHLQRVHQRFVEFCSVCYKVFDEKDHLDRHKEILHGNSCLQCKICKLGFKSERSLSAHMYTHTLFNCSSCNSSFENRKCYLYHRHNCKGSKFTKQDVYECHDCGSKYTRKPSLRVHIVQKHLNVLPYICQICGKRSSSKTHHQSHELIHKTERKIYQCYCGAKMRTVLGFHMHQRIHSGEKPYECQECGDKFLSASRRLDHIKRKHRSKDHGCLECDARFVRPSELKKHCRLAHFVQEDQLFPRGLCISCTSVAVSASEFRIFVNKSQQLWTNCVNSLQTLPTLNTSHKSLYAIVRENLLLQTVNNFEGSAKDLIEHLANRIVKRKPLIVERKPRHPRTGPACSCTDCGKSFLSPYYLNMHLRNSGQKEACWLCGAMLIRGQEMKQHLHKIHKTEMFLCTECPMLFKTDVDRKRHTKKCHGPGVMTCSDCGRTFQRSASYDVHTQMHAVRTCRACGAQFTNRGCYRVHRSKCEPEAKPDLKTIPRNRRSNIRDPATFTCDYCGKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECQDCGEKFISSSRRSEHAKRRHNKGSRLHCPECLASFVRSHELKKHMDKIHGVDNHVVKIKDKGFDMSTAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723354;
- 90% Identity
- iTF_00723354;
- 80% Identity
- -