Basic Information

Insect: Argynnis bischoffii
Gene Symbol: -
Assembly: GCA_033884665.1
Location: CM066637.1:20521014-20534807[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.2 3.5e+02 2.6 0.2 3 17 60 74 58 75 0.87

2 14 0.0029 0.24 12.6 0.0 2 19 186 203 185 204 0.95

3 14 0.0002 0.017 16.2 2.4 1 23 247 269 247 269 0.97

4 14 0.48 40 5.6 2.2 2 21 276 295 275 296 0.93

5 14 0.09 7.6 7.9 0.9 3 23 340 361 339 361 0.91

6 14 0.0076 0.64 11.3 0.2 2 20 367 385 366 387 0.91

7 14 0.00015 0.013 16.6 0.5 1 23 395 418 395 418 0.96

8 14 4e-05 0.0034 18.4 3.0 1 23 437 459 437 459 0.97

9 14 1.3e-07 1.1e-05 26.2 2.7 1 23 466 488 466 488 0.98

10 14 1.2e-07 9.9e-06 26.4 2.3 3 23 505 525 503 525 0.96

11 14 2.7e-05 0.0023 18.9 3.2 1 23 531 553 531 553 0.99

12 14 4.9e-07 4.1e-05 24.4 1.5 2 23 560 581 559 581 0.96

13 14 1.3e-07 1.1e-05 26.2 0.8 1 23 587 609 587 609 0.99

14 14 0.01 0.84 10.9 0.4 1 23 615 637 615 637 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.2	3.5e+02	2.6	0.2	3	17	60	74	58	75	0.87
2	14	0.0029	0.24	12.6	0.0	2	19	186	203	185	204	0.95
3	14	0.0002	0.017	16.2	2.4	1	23	247	269	247	269	0.97
4	14	0.48	40	5.6	2.2	2	21	276	295	275	296	0.93
5	14	0.09	7.6	7.9	0.9	3	23	340	361	339	361	0.91
6	14	0.0076	0.64	11.3	0.2	2	20	367	385	366	387	0.91
7	14	0.00015	0.013	16.6	0.5	1	23	395	418	395	418	0.96
8	14	4e-05	0.0034	18.4	3.0	1	23	437	459	437	459	0.97
9	14	1.3e-07	1.1e-05	26.2	2.7	1	23	466	488	466	488	0.98
10	14	1.2e-07	9.9e-06	26.4	2.3	3	23	505	525	503	525	0.96
11	14	2.7e-05	0.0023	18.9	3.2	1	23	531	553	531	553	0.99
12	14	4.9e-07	4.1e-05	24.4	1.5	2	23	560	581	559	581	0.96
13	14	1.3e-07	1.1e-05	26.2	0.8	1	23	587	609	587	609	0.99
14	14	0.01	0.84	10.9	0.4	1	23	615	637	615	637	0.98

Sequence Information

Coding Sequence: atggcTTTACACACGACAAATgtgaaaatagaaaatttatgcCGTACTTGTTTATCTAAAGAGTTTAAAATGCTCTCGGTGTTTGAAGTGCGTTTAGGAATGGACACATTAGACAATATAATTGCTTCAATAACTGGTGTAAAGATAGAGCAAGGAGATGGATTACCTTCTACAATATGCAATGATTGTAAAGAGAAAGTTGTTAGTGcatatgattttaaaactcgTTCACAAGAAGCTGAGATCACATTAAGAGGTCTACTAACTAGAGATCttagtaatgaaaataatttaatatttgagCCTGATGCTGTTGCAGTTAAAGCAGAACATTTTAATAGAGATAATCATGATGTTTATATGGATTTGGATTTATCACTAGCTCTGGGCAATGTTCAAGAAAGTTATAGTGATGTAGatgcTGTGAAATGTGAAGAAGCAGGAACACAGTGTAAAGAGTCTTATGTTGATTCTCAGCAACATGAAAATACAAATGGTAAAAATGAAAGCATAAAACAATCCTCAAAAGcAGAAACTAAAGAATCTGACAGTACATATTGCCCTGTCTGCGGATCAAGTTTTGCTGATGCTGAAGGCCTTACAAAACATGCTTGGGAACGGCATGCAGATCTTATGGGACCCAAGAAGAGGGGTCGAccaaaaaaattacttactagtACTATTCTAAACAAATTATCTGAAAATGgctataatttgaaatatttgccAGACCTGAAACACAAATGTATGTTTTGCAAGGAAAATTTCAAAACCAAAGATGATTTGATATTACATATGTTAGAACATAAAGATGTGAAATTGCTCAGTTGcttaatttgtaagaagatgTATCTTAAGAAAAATGACTTGGAACATCATCAATGTGTACAATCTAGAAATGATTTGGATTACAGCAAGCAGGGGGAGCCACCAGATGCCCaagaaatttataaagaaacattACTTCAGGATGTATTAATGGCTAATGGTGATATGGACTCTGGAAATATAGAGCCATGTAGTGAATGTGGTGAAGTATTCATGTGTAGTACAGACTTGAGTAAACATCGGGATCAAGATCACCCAGAACTTTCTTCACGATGTCACCTATGTGATAAGgttTTCGCAACAGTAAAAAGCGCAGCGCGTCACCGTGCAGTATGTTCTCGAGTTGAGCGTTCATTCGCCTGCACCTCTTGTGggcttcgcttcgctcacgaGGTGTCTCTCAATAAGCACATACTGAGAGCGCACGCGGGACAGAGCGTGTCTGTCCGCTTCATGGACAGGGACAGGACACCGCCTCAACATAGATGTGACACGTGTAACCGACGATTTTACAGAAAGGACTTGCTGGCGAGACATGCGAAAATACACAAGCAAATAGAAAAATGTTTCGAATGTGATGTTTGCAACAAAAAGTTTCATAGAAGGGATAATCTCAAGGCACACATGAGAGTCCACAACGGTACGAGCGAGAGCGGTGGCAATGCAAGCGCGAACACCTGTTTATGTCTGTACTGCGGTCGAAGCTTCTCGAACTCTTCCAACTTAATAGTTCACATGCGACGTCACACCGGCGAGAAACCTTACAAATGCGACTTTTGTGGGAAAGGTTTTCCTCGATCATCAGATTTGCAGTGCCATAGACGCTCGCACACGGGGGAAAAGCCTTGTATATGCGGGGTCTGTGGCAAAGcgtTCTCAAGAAGTAACAAGCTGTCACGCCACATGCGTGTTCACACTGGCGTGAAACCGTACAAGTGTCCGTACTGCGAGAAGGCTTTCTCCCAAAGCAACGACCTAACCCTTCACGTGCGGCGGCACACTGGCGACAAGCCGTACGTGTGCGAGCTGTGTGGAGACCGCTTTATACAGGGCACAGCTCTGCACAACCACAGACGCGCGCACGGTCACTACCCCCCGGCGCCGCTCGTGTACACCATGCAGACCCTCGCGCAGACGCACTGA
Protein Sequence: MALHTTNVKIENLCRTCLSKEFKMLSVFEVRLGMDTLDNIIASITGVKIEQGDGLPSTICNDCKEKVVSAYDFKTRSQEAEITLRGLLTRDLSNENNLIFEPDAVAVKAEHFNRDNHDVYMDLDLSLALGNVQESYSDVDAVKCEEAGTQCKESYVDSQQHENTNGKNESIKQSSKAETKESDSTYCPVCGSSFADAEGLTKHAWERHADLMGPKKRGRPKKLLTSTILNKLSENGYNLKYLPDLKHKCMFCKENFKTKDDLILHMLEHKDVKLLSCLICKKMYLKKNDLEHHQCVQSRNDLDYSKQGEPPDAQEIYKETLLQDVLMANGDMDSGNIEPCSECGEVFMCSTDLSKHRDQDHPELSSRCHLCDKVFATVKSAARHRAVCSRVERSFACTSCGLRFAHEVSLNKHILRAHAGQSVSVRFMDRDRTPPQHRCDTCNRRFYRKDLLARHAKIHKQIEKCFECDVCNKKFHRRDNLKAHMRVHNGTSESGGNASANTCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICGVCGKAFSRSNKLSRHMRVHTGVKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCELCGDRFIQGTALHNHRRAHGHYPPAPLVYTMQTLAQTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00212792;
90% Identity: iTF_00248318;
80% Identity: -