Abis015258.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Argynnis bischoffii
Gene Symbol
-
Assembly
GCA_033884665.1
Location
CM066624.1:7702386-7713226[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00011 0.0089 17.1 0.1 3 23 131 151 130 151 0.97
2 18 9.6e-07 8.1e-05 23.5 1.2 1 23 157 179 157 179 0.99
3 18 5.9e-06 0.0005 21.0 2.7 1 23 185 207 185 207 0.99
4 18 3.9e-06 0.00033 21.6 2.6 1 23 222 244 222 244 0.98
5 18 5.4e-05 0.0046 18.0 3.1 1 23 259 281 259 281 0.98
6 18 3.8e-07 3.2e-05 24.8 1.5 1 23 296 318 296 318 0.99
7 18 0.00017 0.014 16.5 2.8 1 23 324 346 324 346 0.98
8 18 7.2e-05 0.0061 17.6 0.2 1 23 417 439 417 439 0.99
9 18 1.2e-05 0.001 20.1 2.1 1 23 445 467 445 467 0.99
10 18 0.038 3.2 9.0 1.8 1 23 474 496 474 496 0.98
11 18 6.4e-07 5.4e-05 24.1 2.3 1 23 502 524 502 524 0.99
12 18 0.044 3.7 8.8 1.8 1 23 531 553 531 553 0.98
13 18 2.6e-06 0.00022 22.1 1.5 1 23 559 581 559 581 0.99
14 18 0.0005 0.042 15.0 0.7 1 23 588 610 588 610 0.99
15 18 2.9e-06 0.00024 22.0 1.9 1 23 616 638 616 638 0.98
16 18 0.0021 0.18 13.0 0.3 1 20 644 663 644 666 0.93
17 18 3.9e-05 0.0033 18.4 1.3 2 23 673 694 672 694 0.96
18 18 3.7e-06 0.00032 21.7 1.4 1 23 700 723 700 723 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAACAAATCAAGGCAGAGCCTATGAGTTTTTACCCACACCCACATGTGAACACTGGTCCCCCAACAATAGTCCGTTCAGATTCAAATCAtggtattattaatatgaacCAACACCATCCACAAGAAGATTCAAAGGATAGCCTCATAGCACAACACCAAGTACAACACCAACAGGAGCTGCTGGATCAGCACCAACAACATGAAGAATTACACGAGGATGAGGTTGATAATTTAAGTTTCAAAGGTATGGAAGATGAAGGAGTTGAAATGGATATGGATGGCAGACAATGTTCTCAGGGTATGGGAGTTGATATGGGATCAGTTCAAACTAAAATGGAAGTGTCAAATGGTGGTCAAGTACCAAGGTCAAAACCTCAGGCCTGTAAGGTCTGTGGAAAAGTCCTTTCATCTGCTTCGTCATATTATGTGCATATGAAGCTACACTCAGGAAACAAACCCTTTCAATGCAcgGTTTGCGACGCAGCGTTCTGTCGCAAGCCGTACCTAGAAGTGCACATGCGCACACACACCGGCGAGCGCCCCTTCCAGTGCGACCTCTGCCTCAAACGCTTCACCCAAAAGTCCAGTCTTAACACGCACAAACGCGTCCACACTGATGAGCACATGCGGGCTCTGATGGTGAAGGAGCGCCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACAGACACAAGAAAATACATACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGAAAGATACACACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTACACGAAAAGATACATACGGGTTACGGTAATGCAATCGCCGCAAAGACGCAATATGGCGCTTATGCGTACATTAACACCGTGTATCAAAATTATGGGTATCGATGCCGCCGGGCTAGGGGAGGTCGGGGTGGGATTGGCTGCGGGCGGGTGTTCTATGGTCGCAAGCGTCGGCGACGTGCGTTACTCGCTTTTGTGTGTGCACTGGGCGCAGTGCAAGGGCGACCTTACACGTGCGGGCGATGCCCCGCGGCGTTCGCCCGCCGGCCCTACCTGGACACTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAACGCTTCACGCAGAAGTCCAGCCTGAATATACATAAACGGACACACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCCTGTCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGCCCCTATCAGTGCGACATCTGCCTCAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAACGGACGCATTCGGTGCAGGGCCGCCCGTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAGTCCACACTCAACATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGTATGGAGTGTCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAAATACACATGCGCACGCACACTGGCGAGCGCCCCTTCGAGTGCGATGTGTGTTACAAACGCTTCACGCAGAAATCTACACTCAACATTCACAAGCGCATCCACACCGGGGAACGTCCATACGCATGTGATATTTGCCAAAAACGGTTCGCGGTGAAAAGTTACGTTACAGCGCACAGATGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGAGCGGTGCTCGATGACGTTTACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCAGCGGGCCCTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTGCGCGACAGCTACCTCATAAGGCATCACAACCGCGTGCACCGCGAGAACCACAGCAACGTGTCGGCCAACAGCATCGGCACCATCAACAGCGTGGCCGCCAACGCCAACAACGGCGGCTTCGACTCGCCCGGCGTCTGCGACCTCAGTTTCGTGCCAATGGTGAACCGCTACATGACGTCGCAGGGCACGCAGGTGTCTATGCAGGACTCGCAGAGCAAGATGTCCGCTATGTCGCCGCAGTCCATCGCCTCCATTTCGTCCCCGCCGCCGCCGCACACGCCCACGCCGCAGCCGCAGATGTCGATGCGCCTCGCCGATTGA
Protein Sequence
MFEQQIKAEPMSFYPHPHVNTGPPTIVRSDSNHGIINMNQHHPQEDSKDSLIAQHQVQHQQELLDQHQQHEELHEDEVDNLSFKGMEDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQVPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGYGNAIAAKTQYGAYAYINTVYQNYGYRCRRARGGRGGIGCGRVFYGRKRRRRALLAFVCALGAVQGRPYTCGRCPAAFARRPYLDTHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSSGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVAANANNGGFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDSQSKMSAMSPQSIASISSPPPPHTPTPQPQMSMRLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01508242;
80% Identity
-