Abis008072.1
Basic Information
- Insect
- Argynnis bischoffii
- Gene Symbol
- ffmA
- Assembly
- GCA_033884665.1
- Location
- CM066617.1:1136520-1141109[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8e-12 5.3e-09 36.3 0.0 1 36 182 218 182 221 0.93
Sequence Information
- Coding Sequence
- atgaatGTCGAAAATGATATCATGTTTTCTGAATATTTGTGTAGATGTAAGTGTTGTTTAAATGATAATGACTTGAAAAGCTTGTGGGAAGTGCATGAGTGTGATGATGGCGCAGAGGAAATTTATGGACAAATGGTGGTTGAATGTTTCGCGTTACCGtgGTATCCGACAGACGAACCTGAGCACATTTGTGAATTTTGTGTTTTAAAACTTCGTGAAGCTTTGAGTTTAAAGAAGAACATCTTGGCTGTAGaagattttttattgaatgacaaaattaaaaaagaagcaGTACCCCAAATAGATACAGAAGATGAAATGCAGGTTGTGGTGAAGTATGTTCCAGTTGAAGATGAGTACCAGCACGTGGAGTATCTGGAAGTTGAAGAGGCACAggaagATAAATTACAGATGAGAAAACTAATGGAATTTGACAATACAAGTTCAGGCCCCTCAACTCCGGGGGCCTCAAACGCGAGCCCTCAAAGGAAATGGccaaagaagaaaaagaaacacGAACTAACAAAACTTTACAAACAGTACACTCAAGACGATTTAAAGGAAGCTATAAAAGCTGTTAGAAATGGTGTTATGACATGTACCAATGCAGCAACAAAGTATGGCATCCCCAAGAAAACTTTGACTGTCAAAGTTAATACATATGTAGACCGTGAACGTGTCGGACAAACTGAAGACTCCAACgaaaaacattacaaattaatcgaaGAAATCAAACTCCTCCTCACTCACACCACAGCGGTgccttttaaaactaaaacaactAGATATTATTGTTTCTACTGTTCTTCAGACGGACGGAATTTTGAAGATCCTGACGAACTGAGAGAGCATACGAGAACTAAACATGCGCATGAGTggacaaaaattgaaatgtacATGAGACCTCAATGGATGAACGAAGTCATCAAATTAGACGTAGAGGATTTACATTGCAAAATTTGCCTAACAATGTTGCCAGATTGGAACAATCTCTTTCTCCATTTAGGTGTAAATCATGATCTTGAATTTGATATGGCATATACCAGAATAATACCATATGCTTTGAGCTCTGACCTCAAATGTTTTCTTTGCAAGCAAAATTACCACAATTTTGGTCATCTCGACAGCCATATGAATAATCATTACAGCAACTACATATGTTATGAGTGTGGAGATACTTTTTTGTCAGCGAGCCGCTTGGATAAACATTTGAATGTGCATAAAATAGGGAATTATCCGTGCGATTACtgtgaaaaagtttttaaattagagAAGTATAGAGCGAAGCATGTCAGTTTAGTACATATACAAGAAAGTACGGTTAAATGCTTGTATTGCTCTGAAAAATTTGTAGGCATTTTCCAAAGGCATATCCATGTGACCGAACACCataaagaaaaagttaaatatatgacATGTGAGTACTGTGGGAATAGCTATACTTGGAAGCCATATTTTCTAGCGCATATGAGGAGAAAACATGGTgctgagaaaaaatataagtgcAAACACTGTGAAAAAtgctttttaatgaaatatgaattgaaaaatcacaTGGTGAGGCATACGGGGGAAAAGAATTTCATTTGTGGTCTATGTGGGTTAGGTTTTACGAGGATGGTTGGTTTGAAAAGGCATTGTCAGAATGATCATCAAGAAGATTTGACGGGTTAA
- Protein Sequence
- MNVENDIMFSEYLCRCKCCLNDNDLKSLWEVHECDDGAEEIYGQMVVECFALPWYPTDEPEHICEFCVLKLREALSLKKNILAVEDFLLNDKIKKEAVPQIDTEDEMQVVVKYVPVEDEYQHVEYLEVEEAQEDKLQMRKLMEFDNTSSGPSTPGASNASPQRKWPKKKKKHELTKLYKQYTQDDLKEAIKAVRNGVMTCTNAATKYGIPKKTLTVKVNTYVDRERVGQTEDSNEKHYKLIEEIKLLLTHTTAVPFKTKTTRYYCFYCSSDGRNFEDPDELREHTRTKHAHEWTKIEMYMRPQWMNEVIKLDVEDLHCKICLTMLPDWNNLFLHLGVNHDLEFDMAYTRIIPYALSSDLKCFLCKQNYHNFGHLDSHMNNHYSNYICYECGDTFLSASRLDKHLNVHKIGNYPCDYCEKVFKLEKYRAKHVSLVHIQESTVKCLYCSEKFVGIFQRHIHVTEHHKEKVKYMTCEYCGNSYTWKPYFLAHMRRKHGAEKKYKCKHCEKCFLMKYELKNHMVRHTGEKNFICGLCGLGFTRMVGLKRHCQNDHQEDLTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00722969;
- 90% Identity
- iTF_00722969;
- 80% Identity
- iTF_00160276;