Abis008070.1
Basic Information
- Insect
- Argynnis bischoffii
- Gene Symbol
- -
- Assembly
- GCA_033884665.1
- Location
- CM066617.1:1109196-1119428[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 4.1e-09 2.7e-06 27.7 0.0 1 37 155 191 155 196 0.93 2 6 0.027 18 5.8 0.0 10 31 234 255 226 259 0.81 3 6 1.4e-08 9.5e-06 25.9 0.0 5 38 317 350 313 354 0.84 4 6 4.4e-08 2.9e-05 24.4 0.0 5 39 405 439 401 443 0.82 5 6 1.8e-09 1.2e-06 28.8 0.0 5 38 493 527 489 532 0.83 6 6 2.5e-09 1.6e-06 28.3 0.0 1 37 549 585 549 588 0.93
Sequence Information
- Coding Sequence
- atgggaaaaaacaaaatcattgataatttaaaaaggtgCAAATGCTGTTTAGGAGAAGATGGGTTAAAAGATTTGTGGACCGAATATTATAACCAGGGTGAACCTGAGCTATATGGTGAAATGTTGAGTGAATGCTTTTctttaaatTGGGAACAACCATCAATAAACTCTGATTCTGATTCAGaacatatttgtaaaatatgtatatctaaattgCATGACGctgtaaactttaaaaaggaaatTTTCTTGTCTGCACAATTGTTACTGGAAGAAGTTAAAAATGaaTCGAATGAAGTAAAGACGGAGGATGATTCTGATGCTGACATCGAAACAGAGTATTTAAACATCGAGTTTTTAGAGGATGATGATATTGGTAAAGAAAAATCAGATATCAAAATGGAGTCTCCAATGAAACCAATCCaagaagaattatttatgaaccaaaaatctaaaaaatatacagaagaGGATTTCAAGAAATGCCTCGAGGCTGTTAAAAGTAAAACTCTGTCACAATGCAAGGCATCCTTATTGTATAACATACCGAGAAGGACTATTCGAAGTGCCCTTGAGAGTGAAGGTAGTGGTGAGGTAGAAATGGATATAGAATTACTAAACAAATCTAAAGACATCGATATAGAATTTTACATGAATCCAACATCCAAATACTATaaagaagatttaaaaaaatatgccaaAGAGGTTCAAAGTAAAACGCTGTCACAAAACAAAGCGTCCAAATTGCTTAAAATATCAAGGAGGGCTATTCATAACCCTCCGGATAaaacgTCGCCTTCAGATAAAAGTATGAAATTTACGGAAAAAGAAACTATACAAAAGGATGAGGAAATTACAGACAGTGATGATAATACAATGGAGTCACCGGAAAGAGATGAACTATACAATGTTCCAAGGAAAAAAACAAAGAGATACACGGAGGCGGACGTGCAGAAGTGTGTGGAGGCGGTGCAGAGCAAGACCCTGTCCCAGTGCCAGGCGGCCATCTTGTACAATGTGCCGCGGAAGGCGATATATAATGCGTTAAAGAAAATGGCGCCCTTAGATGAAACTACAAGATTAAAGGAAAAAGATAGTGTACAAAAGGATGAGGAAATTACAGATTATGATGATAATACAATGGAGTCACTGGAAAGAGATGAACTATACAATGTTCCAAGGAAAAAACCAAAGACATACACGGAGGCGGACGTGCAGAAGTGTGTGGAGGCGGTGCAGAGCAGGACCCTATCGCAGTCCAAGGCGGCCATCTTGTACAATGTGCCGCGGAAGGCGATATATAATGCGGTAAAGAaAATGCCGCCTTTAGATGAAACTACAAGATTAAAGGAAAAAGATAGTGTACAAAAGGATGAGGAAATTACAGATAATGATGATAATACAATGGAGTCACCGGAAAGAGATGAACCATACAATGTTCCTAGGAAAAAACCAAAGAAATACACGGAGGCGGACGTGCAGAAGTGTGTGGAGGCGGTGCAGAGCAAGAGACTGTCTCAGTGCAAGGCGGCCATCTTGTACAATGTGCCGCGGTCGGCGATACATAACGCGCTAGTGAAACTTAAATTGGCCTCAGCAAGCGACCCAATGGAGGTGATAACGGTCCAAAAGTCCAAACATTACACCGAAGAGGACTTCAAGAAGTGTTTGGAGGCGGTCAAGAACAAGACGATGACGCGACGTCAGGCCTGTACCTTGTATAACGTACCAAGCAGTACCCTCCACGCCGCTATAGAGAaatatttTGATGACGCTGAAAGAAAAACAGATGTGCAAAAGGCTCAAGATAATAtagacttaataataaaatatacgaatGTAACTCCATTGAGAGGGTTTCATCGTGCGGGATACGCTTGCGTCTTTTGCTCTATGAGATATGAGAAGCCCGCGGATTTGAAGAAACacactttaaaaaaacacaGCAAATTGCAACCTAAAGCTAGCGCGGATAGAATAGTTAAACTTGACGTGACAGGCCTAAAGTGTAAAATATGTGACGAAAAAATCGAAACACTTGAAAGTGTTTTGGAACACTTGAGCTCGGTTCACGGGAAGAAAATTTTCACTGGTATCCCCGATTTTTTTATACCGTTCAAATTTGAAAGTGAAGTGTTGGAGTGTGCGGTTTGTTCGGAAACGTTTCACAGTTTCAAGCCATTAAACGACCATATGAATTGGACTCACTATAAAAATTTTGAGTGCGAGGAGTGTGGACGAGGCTTTATAAGTAAACATTCTTTACGAGCGCACAGCCTAAGACATGAGACGGGAGTATTCAAATGTAGATTTTGCTCAAAAGTGTTTTCAAGTAAAGCGCGAAGTAACGCCCACGAACGTACAGTACACGTATACAAAAACTATCTATACACATGCGGATATTGTTCGGAACGATTTTCCAATTTAACGAAGAAAAAACAGCACGAAGTGACAAAACATAATGCAGCGCAAACTGTATATAACTGTCAGGCGTGCAGCAAATCCTATCTGGATCTGCGTTCGCTAAGAATTCATATACGAGCGTTTCACTTAATGCAGCGTCCACACAAGTGTGCAAAGTGTGACTTCAGTGCGTACACGCCTTATGATGTGAAAAAGCATATGATAAAACATACGGGggataaaaaatttacatgcGACATCTGTTCGAAGTCGTACGGCGTGAAGTCGACACTTCGAGAGCATATGCGGATACATGCGAACGATAGGCGGTTCAAGTGTGAGCACTGTGGGCAGGCGTTCGTGCAGAAGTGTAGTTGGAAAGTGCATATGCGGATAAAACATGGCGAACAtgtgtag
- Protein Sequence
- MGKNKIIDNLKRCKCCLGEDGLKDLWTEYYNQGEPELYGEMLSECFSLNWEQPSINSDSDSEHICKICISKLHDAVNFKKEIFLSAQLLLEEVKNESNEVKTEDDSDADIETEYLNIEFLEDDDIGKEKSDIKMESPMKPIQEELFMNQKSKKYTEEDFKKCLEAVKSKTLSQCKASLLYNIPRRTIRSALESEGSGEVEMDIELLNKSKDIDIEFYMNPTSKYYKEDLKKYAKEVQSKTLSQNKASKLLKISRRAIHNPPDKTSPSDKSMKFTEKETIQKDEEITDSDDNTMESPERDELYNVPRKKTKRYTEADVQKCVEAVQSKTLSQCQAAILYNVPRKAIYNALKKMAPLDETTRLKEKDSVQKDEEITDYDDNTMESLERDELYNVPRKKPKTYTEADVQKCVEAVQSRTLSQSKAAILYNVPRKAIYNAVKKMPPLDETTRLKEKDSVQKDEEITDNDDNTMESPERDEPYNVPRKKPKKYTEADVQKCVEAVQSKRLSQCKAAILYNVPRSAIHNALVKLKLASASDPMEVITVQKSKHYTEEDFKKCLEAVKNKTMTRRQACTLYNVPSSTLHAAIEKYFDDAERKTDVQKAQDNIDLIIKYTNVTPLRGFHRAGYACVFCSMRYEKPADLKKHTLKKHSKLQPKASADRIVKLDVTGLKCKICDEKIETLESVLEHLSSVHGKKIFTGIPDFFIPFKFESEVLECAVCSETFHSFKPLNDHMNWTHYKNFECEECGRGFISKHSLRAHSLRHETGVFKCRFCSKVFSSKARSNAHERTVHVYKNYLYTCGYCSERFSNLTKKKQHEVTKHNAAQTVYNCQACSKSYLDLRSLRIHIRAFHLMQRPHKCAKCDFSAYTPYDVKKHMIKHTGDKKFTCDICSKSYGVKSTLREHMRIHANDRRFKCEHCGQAFVQKCSWKVHMRIKHGEHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00160186;
- 90% Identity
- iTF_00160186;
- 80% Identity
- iTF_00160186;