Apag009939.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- -
- Assembly
- GCA_963969455.1
- Location
- OZ018311.1:26093667-26097755[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0061 0.46 11.0 0.1 2 23 126 148 125 148 0.90 2 13 0.012 0.93 10.1 4.6 2 23 277 299 277 299 0.91 3 13 0.001 0.079 13.4 1.3 2 23 415 437 415 437 0.95 4 13 8.7 6.5e+02 1.1 7.4 3 23 539 560 538 560 0.86 5 13 1.1 80 4.0 3.0 3 23 614 635 613 635 0.94 6 13 0.00033 0.025 15.0 0.0 3 23 691 712 689 712 0.94 7 13 0.0039 0.29 11.6 0.6 3 23 745 766 745 766 0.92 8 13 0.0091 0.68 10.5 3.6 2 23 813 835 812 835 0.96 9 13 0.017 1.3 9.6 2.4 3 23 850 871 848 871 0.94 10 13 2.9e-05 0.0021 18.4 0.1 2 23 953 975 953 975 0.93 11 13 0.28 21 5.8 0.7 1 23 1052 1074 1052 1074 0.98 12 13 9.7e-05 0.0073 16.7 1.1 1 23 1134 1157 1134 1157 0.94 13 13 0.034 2.5 8.7 0.5 1 23 1240 1263 1240 1263 0.98
Sequence Information
- Coding Sequence
- ATGACGTCGACCGTGGCCCGAAACGCGCTGGTTCCCGAGTCCGGCGAGCCGGAGAGCGACGGGTCCAGCtgcgaggagcgagagaacTGCAAGCGCCTGCTTCACTGCGACGCCGACTCGTCCGGCGGCAAGAAGCGTCGGAAACAGACGACTCCGGTGAGGTTCCCGGCCTCGTTGACGGCGGACGaacgcgaggacgaggaggaggaggaggaggaggaggaggaggaggaggaggagggagaggtgcgggcggaggaggaggacgagaatgagaacgacgaggatgacgccGCCGCGGCGGAGGACAGCGGCGACGGGAGGCACGGAGCAACGCTTCGAACGCCCAGGGACGAGGACTCGAGCGACGAGATCCGGTGCCGGTACTGCGCCCGGTCGTACGAGGACAAGGAGAGCCTCGCGCGCCACGTCGCCGCGGAGCACGAGGGCGGCGGGAGCCCGTCGAGCGCGGCCCGACAACCGACAACGCGCGTTCGCGCGAAACAGGAGCCGctcgcggcgacgagccgatcgGAGAGCCCCGTTAATCTCACCGGTATCGGTATCAAGAGCTTCGCCGCGACGTGGCTCGCCGGTCACGCGCAGTCGCACGGCCAACAGATGCGCTCGGGCTCGTCGAACGTCGAGGAATGGTCGCCGAGCGGCCCGTTGACGTCGATAACGAATCACCTGCAGACGCTGCCGTTCGCCGGCTCCCTGGCCCAGTACCTCCCGGTACCGAGCTTCGCCTTGACGGACGCCGGCCAGGCGACGAGCGCCAGAGCCCCGATAGGACCGGCACCGGTTCGGATATTCAATCCCGACGCCTACTGCGACCTCTGCAACAAGGAGTTCTGCAACAAGTACTTCCTCAAGACGCACAAGGCCAACAAGCACGGCATATACGTGGACACGCCCGGGCAAACGGTCGCCGAGTCGGTCGCCGCCCTCGGAGCGACCTCGTCGTACGTCGGATCGTTTCTCGCCAACAGCAACGCGAAACAGGACAGCCAGCAGCACGGCGCTCAGCTCCAATCTCATCAGCAGCACCATCACCCCCACCCCCTCcctcaccaccaccacccccACCACCTGCTCCACCatcaccagcagcagcagcagcagcagcagcagcagcagcaacagcaccAGTCCCAGCAGCAGCGATCGGCCGGTTCCCCGAGCGTGGCGTCCATTTCGCTACCGCCCCCGTCGGTGTCGGGGACGATCGTCCTCAGCGCCGTTTGCGATCTGTGCCAGAAACGATTCAAGAACGAGGATTCCGTTCGCAAGCACAAGCTGAAGGTACACAACGTCGGGGCGACGGACGCGGGCCTCGAGGATTGCGAAGCGTCGCGGATGTTGCCGCCACcgccgcagcagcagcagcagcagtcgTCGCACGACGCCGACGAACGGGAGGGCCCGCGACGAAGCCCCAGCCCGGGGGCGATGGAGGCGTTGTTCAAGCAGGAATTCGGCGTCGAACAGGAGGATTCGGGTTTCGTGCCGGCACCGAGGCGCATGTCGCCGCAGTCCATCCAGCAGGCGCGCGACTCCGGATTCAGCGCCGACCGTCTGCGGCGTCTCGGCGTCGTGAATCCGGAAGCGTTTTGCGAGATCTGCTGCAAGGAGTACTGCAACAAGTACTTCCTCCGCACGCACAAGCTCAAGCGGCACGGGATCGTCGTGCAGGAGAGCGAGAAGTCGCCCGTGAATCCCGGGGCCGCCGCGACCTGGCACCACGTGCAGACGAGCCCGCTGAACCTGATCGTCGGCGAGACGAGCGGGAACGGTTCCGAGTCGGGTGGCGAGAGGCCGACGCCCGACGAACGGGAGTGCAAGCCCTGCGGCACGCGGTTCCACACGGCCCTGCTCTATCACGCTCATCGCCGGAAGGTACACGAGCCGGAGGACGACGCGTCGCCCGGGCGGGAAAGCGAGATcgacgcggcggcggcggtggcggccgCGGAGCAACGAACGGCCGACTCCATCAGCGAGGATCTCCAGAAACTGCAGACGATGATCCTGCAGCTCAACGGGCTCGAGTCGGGCCGCGGGACGGCGTGCGCCGTCTGCGGCAAGGAGTTCGAGACGCGGGCGGCGCTGAGGGCGCACACGGTGACGGAACACGGCGCCGCGGCGATGGTCGAGGAGCCGTCGACGTCCCCGGGTCGTCGCGGGGCCGACGACTCGCCGACGCCGAACGGGGCCTCCACGTCCGTCGGCTGCACCCTCTGCGAAAAGGAGTTCCCGAGCCACGAGGCGCTGCGGAAACACCTCGCGGACGATCATCGGGCCACCACGCCTACCTCCGCGACGGCAGCGGCGTTGCCGAGCTCCAGCTCCGTTCCGGTAGCGCCGACCGCGACGCCGCCGGGGCAGCAGCAGCCGGAGAGGAGGGCGTCGATATCGATGACGCCCACGTCGTCCTACTGCGAGATCTGTAACAAGGAGCTGTGCAACAAGTACTTCATGAAGACCCACATGCAGCGGATGCACGGGATCGAGATCGAGAACGGGGCGCAGATCGGCGGCGTGATATGCAACATCTGCAACAAGGAGCTGTGCAGCAAGTACTTCCTGCGGGTCCACAAACAAAACACccatcgcgtcgtcgaggatACCGCCGCGACGCCGAGCACCGCGGCgggcaacaacaacaacaacaaccacaaccacaaccacaaccaccacaacaaccacaacaacaacaacaacaacaacagcatcAACAACAACGCCGCGAAGCAGGCGGACAACGATCACTCCTCCGGCGGCGTCGACGACGCGGCCCTGAAACCCGAGCAGCTCGGCGACCTCAGCCACCGTTACTTCACCCACTTCACCGAGGTTTGCCCGATCTGCGGCCGACGATTTCGCAGCACCAAGTGGCTGAAGGCTCACCTGCTCGGCGACCACGGCAAGCAGGGCGTCGACAAGTGGCGAGAACTGGAGCAACAGTACCAGACGGTACCGCGCGGCAGCGGCCGCTCGCGCGGCAACGCGGGCCACCCGAACCCGAGCCTGCGGATACCGAACGGCGCGGAGCTCGCGCAGCATCCCAAGACCAGCGACTACGCCGCCCTCGGCAACCAGGTGCTGTCGACGCTGTTCGGCTCGAGCGACGACCAGCAGCAGGCGAACACCTATCGTTGCTCCTTCTGCAGCTTCTCGACGCCGGTCCTCGCCTTTCTCTTCGTCCACGAGAGATCGCACCCGGGCGTCCACGGTAGCGCCTACACCGCCGCCCCCTCCCAATCGTCCGACACCGATGCCGcgagaacaacgacgacgacgacgccgactacgacgacgacgacgacgacgatgacgatgacgatgacgaccgcgacgacgacgaatacgacgacgacgagcggtGGGGGAGGGGCCCACCAGTGTCCCGTCTGTCTTCAGAGCTTCTCCCAGCCGGAACTGCTGCGGCACCATCTCCTCGCCCAGCACCAGTTCCCCGGCTTGATCTCGCCGTCGTTTCAACCGTCGTTGCCGGGCAGCTCGAGATCGGACTCGGTCGTCGACGCCGAATCTTCCAAAGACCCGAACGACGCCGAGGGCAGGATCGAGGACGCGGCGAGGCCGTCGACGAGCCCCCAGATCTCGATCAGCGGCTCCTCGCCCTCCAACGACCATCTCGCCAGAGCGCAGCGGGGCGAGGAGGCGACCGCCGTGCAGGTGACGCCGCAGGGTGCCTACAAGTGCGCCCAGTGCGGCTTCGCGACGGCGAACCTGAACCGCATCCGGAAACACATCAAGAAGGACCATCGGGCGGCGGCCTTCGGCGGCGACCCGACGGACACGGTGCTCGGCGAGCTGGCCCGGACCCTCCGCGACGTGGCGGGTAAACAGAAGCTGCCGGCGAGCTACGCGATGCCGAGGGATGGAACACCGAGCGCGGAGAAGACGATCATGCAGCCGTTTCTCATCGAGGAGTCGGAGCCGGCTGCCGGGGCGTCAGAGGTGAGTCATCAGGAGAAACGATTCGGGCCGGCTCTCGTATACCTGCCGGTCCGGGCGCGCGTAAACGCCCCGTTAACGACGTCGTTCAATCTGAGTCCGGCGTGA
- Protein Sequence
- MTSTVARNALVPESGEPESDGSSCEERENCKRLLHCDADSSGGKKRRKQTTPVRFPASLTADEREDEEEEEEEEEEEEEEGEVRAEEEDENENDEDDAAAAEDSGDGRHGATLRTPRDEDSSDEIRCRYCARSYEDKESLARHVAAEHEGGGSPSSAARQPTTRVRAKQEPLAATSRSESPVNLTGIGIKSFAATWLAGHAQSHGQQMRSGSSNVEEWSPSGPLTSITNHLQTLPFAGSLAQYLPVPSFALTDAGQATSARAPIGPAPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDTPGQTVAESVAALGATSSYVGSFLANSNAKQDSQQHGAQLQSHQQHHHPHPLPHHHHPHHLLHHHQQQQQQQQQQQQQHQSQQQRSAGSPSVASISLPPPSVSGTIVLSAVCDLCQKRFKNEDSVRKHKLKVHNVGATDAGLEDCEASRMLPPPPQQQQQQSSHDADEREGPRRSPSPGAMEALFKQEFGVEQEDSGFVPAPRRMSPQSIQQARDSGFSADRLRRLGVVNPEAFCEICCKEYCNKYFLRTHKLKRHGIVVQESEKSPVNPGAAATWHHVQTSPLNLIVGETSGNGSESGGERPTPDERECKPCGTRFHTALLYHAHRRKVHEPEDDASPGRESEIDAAAAVAAAEQRTADSISEDLQKLQTMILQLNGLESGRGTACAVCGKEFETRAALRAHTVTEHGAAAMVEEPSTSPGRRGADDSPTPNGASTSVGCTLCEKEFPSHEALRKHLADDHRATTPTSATAAALPSSSSVPVAPTATPPGQQQPERRASISMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKQNTHRVVEDTAATPSTAAGNNNNNNHNHNHNHHNNHNNNNNNNSINNNAAKQADNDHSSGGVDDAALKPEQLGDLSHRYFTHFTEVCPICGRRFRSTKWLKAHLLGDHGKQGVDKWRELEQQYQTVPRGSGRSRGNAGHPNPSLRIPNGAELAQHPKTSDYAALGNQVLSTLFGSSDDQQQANTYRCSFCSFSTPVLAFLFVHERSHPGVHGSAYTAAPSQSSDTDAARTTTTTTPTTTTTTTTMTMTMTTATTTNTTTTSGGGGAHQCPVCLQSFSQPELLRHHLLAQHQFPGLISPSFQPSLPGSSRSDSVVDAESSKDPNDAEGRIEDAARPSTSPQISISGSSPSNDHLARAQRGEEATAVQVTPQGAYKCAQCGFATANLNRIRKHIKKDHRAAAFGGDPTDTVLGELARTLRDVAGKQKLPASYAMPRDGTPSAEKTIMQPFLIEESEPAAGASEVSHQEKRFGPALVYLPVRARVNAPLTTSFNLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -