Basic Information

Insect: Arge pagana
Gene Symbol: -
Assembly: GCA_963969455.1
Location: OZ018312.1:25242648-25246583[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.7 53 4.5 0.1 2 17 61 76 60 77 0.88

2 16 1.2 89 3.8 3.9 2 23 276 298 275 298 0.96

3 16 0.034 2.5 8.7 0.6 1 23 404 426 404 426 0.98

4 16 0.0016 0.12 12.9 0.2 1 23 475 497 475 497 0.94

5 16 0.017 1.3 9.6 0.3 1 20 544 563 544 565 0.92

6 16 7.1 5.3e+02 1.4 2.3 1 23 577 600 577 600 0.94

7 16 0.031 2.4 8.8 1.1 2 19 606 623 605 628 0.93

8 16 0.0015 0.11 13.0 0.1 1 23 679 701 679 701 0.97

9 16 0.0005 0.038 14.4 0.1 1 23 707 729 707 729 0.97

10 16 0.011 0.85 10.2 1.2 2 23 772 794 771 794 0.93

11 16 0.00048 0.036 14.5 0.4 2 23 802 824 802 824 0.97

12 16 0.00017 0.013 15.9 0.5 2 23 833 855 832 855 0.96

13 16 0.028 2.1 9.0 0.1 1 12 865 876 865 878 0.91

14 16 0.017 1.3 9.6 1.3 1 23 934 956 934 956 0.96

15 16 0.79 59 4.4 0.1 1 21 961 981 961 984 0.85

16 16 0.0075 0.57 10.7 2.4 1 23 1023 1046 1023 1046 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.7	53	4.5	0.1	2	17	61	76	60	77	0.88
2	16	1.2	89	3.8	3.9	2	23	276	298	275	298	0.96
3	16	0.034	2.5	8.7	0.6	1	23	404	426	404	426	0.98
4	16	0.0016	0.12	12.9	0.2	1	23	475	497	475	497	0.94
5	16	0.017	1.3	9.6	0.3	1	20	544	563	544	565	0.92
6	16	7.1	5.3e+02	1.4	2.3	1	23	577	600	577	600	0.94
7	16	0.031	2.4	8.8	1.1	2	19	606	623	605	628	0.93
8	16	0.0015	0.11	13.0	0.1	1	23	679	701	679	701	0.97
9	16	0.0005	0.038	14.4	0.1	1	23	707	729	707	729	0.97
10	16	0.011	0.85	10.2	1.2	2	23	772	794	771	794	0.93
11	16	0.00048	0.036	14.5	0.4	2	23	802	824	802	824	0.97
12	16	0.00017	0.013	15.9	0.5	2	23	833	855	832	855	0.96
13	16	0.028	2.1	9.0	0.1	1	12	865	876	865	878	0.91
14	16	0.017	1.3	9.6	1.3	1	23	934	956	934	956	0.96
15	16	0.79	59	4.4	0.1	1	21	961	981	961	984	0.85
16	16	0.0075	0.57	10.7	2.4	1	23	1023	1046	1023	1046	0.95

Sequence Information

Coding Sequence: ATGGACAACGCGACGACGGGATCGGTGAGCTTCGACAATGTCTGCAGACTTTGTTTGGCCTCCGACGAGCCGAAGTTGTCCATCTTTCAGGGAGACTATGCTTCGATGGTTCCGCTCGCGCTCAAGATACAGGATTGTTTGTCGATTCAGATTTCAACCGGGGATAAATTGTCGACTTTGATTTGCgaaatttgtaataaaaacgTGAATCAATGGCACAGCTACAAGGAATCGTGTCTGAAGGTACAGGACAAACTTCGCCAATGGCAACTCCAACAGTCCGTTCAATCTACCCCTTTGaacgTAACCATCAAACAGGAACCCGTAGACTTGGAATTCGACTCGGACCAGAACGGGGTATTGACGGATTCTCCGATCTCGACTCATGAAAACTCCGGTCAGGGCACGGATCTGACCACGATGCGAGAGACGGAGCTACACGTCGCGTCGGAAAGGTATGCCAATAAGATCGTACGAAACGAATTAACCTGCAGACGAAAGACGAAGAGCTTGGGAAACATAGCGCCGTCATCCGGCGTGCCCGCCGAATCGGACAAACCGCAAATGCGCGTTAGACAAGATTTGACGTCGATAGAAATCAAGACGGAGTCGATCGAGGACGAATACGACTCGTCGTTCGAGGTGGAATCCGTTGTCGGCGGTGAGATCGTACCAAATCCCGTGGCCATAGGTACCGCGAACGAGGACAGAATCATGGAGGCGGATTCGACGCAACGATCCAACTCCTCGGTATTACGAAGAAAACGCAAAGTAAGACGAGGTCCGTACACTCACATCAGGAACAGGCAAAAGagctataaaaaaaagtgcacgTTCTGTCAGATATACCTTCACTCGAAGTATTCGTACGCCAAACATATGGAAAGATTTCACACGTGGGGGGGgcaggaggaagaggaggaggaacaggaggaggaggaggaggatagCTCGCACGTTttgtcgacgaaatttcaaaatccgTTGCGTACGAAGAGCGGCAACGGCCCGGGAGACTCGTCTACGCGCGAGTTCGCCGGCGTAACCTCTTGCCAGACCGGCGAGCGCGCGGACAACCCGCAGGCCTACGACAAGGACATAGACGTGGAGATGATCGAGGACGTGGAGGACGAAATAAACAACATGGATACGAACTCCGACACACCCCTCTCGCAGCTGCAACACACGATCATCGGCCAGCTGAAGACGTACTCCTGTTACTCGTGCGAAATAGTATTTCCGGATCGCCGCAGTACCCTGAATCACCTGAGACAGCACATGCCGGACCTACGCCCGTTCACCTGCGTCGCTTGCCTGAACCAGTTCCCGAATCAGCCGGCGTACAAGCATCATTGCGCCACGTCGTACGAATGCGCGATGAAAATCGCGTCGGTGGAGCCCAGGTCCGGCACGGAAAAGTACTTCGCTTGCAACATGTGCTCCAAGTCCACGGCTAATCGTAAGGAATTGCTGAACCACGTCGCCGAACACGCCGAACACAAGAGTTATCACGGCCAAGAGCCGCACGAAAAGCCGGCGAGAGCCAGTTTTACCGACGATCTACCACCAGCCTCCAGCCAGTGGCCGAGCCTTCCGGGACCGTACGAGAACGGGGATCCCGCGTACAATCACGCCTGCGATTATTGCGGCAACATATACAAGCGTCGTCGAAACATGCTCGTCCATCGCGAGCTTTGCAGCAAATTGCCGGTCGACGCGAGAATCTGTTACACCTGCGTGCGTTGCCGAATGACGTTCCTGcagttttacaaattttacaaTCATCTCGGCACGGTTCACGGCACATCGGACATCGTCTGCAGCAAGTGTCGGAAAGAGTTCAAGACGACGTCGGAGTACCTGACGCACGACGACAAGTATCACAGGAATCGCAACCCAGGGGAGAATTCAGCCGATCGGACGGATGCCGCGGGTGCTAAATCGCCGCCCGCCAGTTTCGAGAGTCCGATGAAGGATTGGAACGCGTTCGAGGCGGAGGTACACGCGAACGAGGCACGGATCAGTCGGCAAAAGTACAGCTGCGCTCTCTGCGGCCAAGAATTCCCGACGCGAACGGAGCTCGGTGAACACCGGAATCTTCACCTGAAAGTCAAGATCTATTCCTGCGTTATTTGTCGCAGCATGTTCAGCAGTGCCGGCGCGCTGGAGGTTCACATGAAGGATCACGGGATCGAGGATCCGGTCGAGCAAAGCGCGCACACGTCGTGCGTCGAATACGAGGGTACGGAGGACACGAAGGATCCGAATTTGATAAACTCGTTGAACCCGGATGATCCGGACGCGGAGGACAAGCAGTGCAAGATTTGCAAAAAGCAGTATTCCAGCGTGGCGAACAAGAATCGGCACGTTTCGAACGTGCACGCGTGGAAGCTGAACGATCGGACGTGCCCGCGCTGCGACAAGCAGTTCAAAACCGACGCGAAGTACGCGCAGCACATGGCGACGGAGCACGGAGATTCGGCCGCGGGGCCGATACGGTGCACCAATTGCCCTCAGACATTCGTGAACCGGGCGAACTTTATACTCCACTACAAGGTCCGTCACGACCCTAGCAGAGCGCTGCACGGTCCGCACGAGTGCGAGATCTGCGGCAAGGAGTTCAAGCAGGCGCTACTCCCTGCAGATCCACAGAGGATGGCACAATCGTCGGAGCAAGCGGATGATCATGGATCAAACGGCAGGCATTCGCGACGGCGGGACCTCCCGCGTCGTTCCTCGAACACGAGGCGGATCAACCTGAAGCTTCACTTCGCGGCCGTCCACAAAGACTACAAGTCGCACGCGTGCAACGTTTGTCTGACGATCTGCAACAGCCCGGTTGCCCTGAAGACCCACATGGACAAACATTCCGTCTGCAAGTACCAGTGCAACCTGTGCCGGCAGCCGTTCCTCTCGCGGGCCGCGGTAATGAGCCACATCGGCGGCCGACACGCCGAGGTCTACCCGGAGATCGAGAGCGACCGAACGAAACTGTTCTCGGACCTGACGGTCCCGGTCGAGCCGATCGATCGGAAGCCGGCGATGGGGGGGGTCGGCGGCGCGACGTTCGACTGCGATCGTTGCAGAAGGAGCTTCGAAACGTCCCGGGGCATGAAAATGCACATGTACAAACGCCACTCGACGCGTTCCTGA
Protein Sequence: MDNATTGSVSFDNVCRLCLASDEPKLSIFQGDYASMVPLALKIQDCLSIQISTGDKLSTLICEICNKNVNQWHSYKESCLKVQDKLRQWQLQQSVQSTPLNVTIKQEPVDLEFDSDQNGVLTDSPISTHENSGQGTDLTTMRETELHVASERYANKIVRNELTCRRKTKSLGNIAPSSGVPAESDKPQMRVRQDLTSIEIKTESIEDEYDSSFEVESVVGGEIVPNPVAIGTANEDRIMEADSTQRSNSSVLRRKRKVRRGPYTHIRNRQKSYKKKCTFCQIYLHSKYSYAKHMERFHTWGGQEEEEEEQEEEEEDSSHVLSTKFQNPLRTKSGNGPGDSSTREFAGVTSCQTGERADNPQAYDKDIDVEMIEDVEDEINNMDTNSDTPLSQLQHTIIGQLKTYSCYSCEIVFPDRRSTLNHLRQHMPDLRPFTCVACLNQFPNQPAYKHHCATSYECAMKIASVEPRSGTEKYFACNMCSKSTANRKELLNHVAEHAEHKSYHGQEPHEKPARASFTDDLPPASSQWPSLPGPYENGDPAYNHACDYCGNIYKRRRNMLVHRELCSKLPVDARICYTCVRCRMTFLQFYKFYNHLGTVHGTSDIVCSKCRKEFKTTSEYLTHDDKYHRNRNPGENSADRTDAAGAKSPPASFESPMKDWNAFEAEVHANEARISRQKYSCALCGQEFPTRTELGEHRNLHLKVKIYSCVICRSMFSSAGALEVHMKDHGIEDPVEQSAHTSCVEYEGTEDTKDPNLINSLNPDDPDAEDKQCKICKKQYSSVANKNRHVSNVHAWKLNDRTCPRCDKQFKTDAKYAQHMATEHGDSAAGPIRCTNCPQTFVNRANFILHYKVRHDPSRALHGPHECEICGKEFKQALLPADPQRMAQSSEQADDHGSNGRHSRRRDLPRRSSNTRRINLKLHFAAVHKDYKSHACNVCLTICNSPVALKTHMDKHSVCKYQCNLCRQPFLSRAAVMSHIGGRHAEVYPEIESDRTKLFSDLTVPVEPIDRKPAMGGVGGATFDCDRCRRSFETSRGMKMHMYKRHSTRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -