Basic Information

Insect: Arge pagana
Gene Symbol: -
Assembly: GCA_963969455.1
Location: OZ018309.1:15828077-15830264[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.035 2.6 8.6 0.1 1 23 222 245 222 245 0.87

2 10 0.00042 0.031 14.7 0.3 2 23 260 281 259 281 0.97

3 10 0.00011 0.0082 16.5 7.4 1 23 398 420 398 420 0.98

4 10 0.0049 0.37 11.3 1.3 2 23 427 448 426 448 0.91

5 10 3.8e-06 0.00028 21.1 0.4 1 23 454 476 454 476 0.94

6 10 5.7e-05 0.0043 17.4 2.9 2 23 482 503 481 503 0.97

7 10 1.8e-07 1.3e-05 25.3 0.3 1 23 509 531 509 531 0.98

8 10 0.0012 0.091 13.2 0.6 1 23 537 559 537 559 0.97

9 10 0.00016 0.012 16.0 3.4 1 23 565 587 565 587 0.98

10 10 5.2e-05 0.0039 17.5 0.3 1 23 593 615 593 615 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.035	2.6	8.6	0.1	1	23	222	245	222	245	0.87
2	10	0.00042	0.031	14.7	0.3	2	23	260	281	259	281	0.97
3	10	0.00011	0.0082	16.5	7.4	1	23	398	420	398	420	0.98
4	10	0.0049	0.37	11.3	1.3	2	23	427	448	426	448	0.91
5	10	3.8e-06	0.00028	21.1	0.4	1	23	454	476	454	476	0.94
6	10	5.7e-05	0.0043	17.4	2.9	2	23	482	503	481	503	0.97
7	10	1.8e-07	1.3e-05	25.3	0.3	1	23	509	531	509	531	0.98
8	10	0.0012	0.091	13.2	0.6	1	23	537	559	537	559	0.97
9	10	0.00016	0.012	16.0	3.4	1	23	565	587	565	587	0.98
10	10	5.2e-05	0.0039	17.5	0.3	1	23	593	615	593	615	0.95

Sequence Information

Coding Sequence: ATGGCGATGGGAGAATcatattgcgaaaaaatcgatgaaatatgCCGAGTTTGTTTGAAACGTGATGACTGTATGGAatgtattttcgaaacggttGATGTAGACAACGGGGAACTTTCTATCGCGCAAAGAATTGCTACCATTGCCCGTGTACAGATTCATCAACTCGATGGCCTGCCGGCGCTGATCTGTCACACGTGTCGTAGTCAAGTGGACAAGTCGTATAATTTCCAACTACTCGTCGAGATTTCAGATCGGTCGTTGCGACATTATTTGGATAGCGGGGAATCGGAAGAAGTAACGGTCAAAGAAGAGTCTTCGGACAAATCGTCGCAGAcaagcgacgaagaaaatatggacttggagaattttttattagaaaatgATATAACGAATCATTCCGATATAagcgtagttttttttcaatcggaaGATGGTGCTACGGCCGTAGATATTTGTAATATCGgggaaagtgaaaaattagatttggaaaatgaacgatCGACGAGCAGCGTCGGAGCAAGGAAGGGGGAATTTGCGAATACTACGCTTACTAAACATGCAACGGGCAAATTGGATGACGAAGAAATTTCAGGACTGGAACGATTGCTCACTTCGAATAAAATGTATTTGGAAAGGACGCCACCCAAAGTTCATCGAATATACACTTGTAACGATTGCGACGAGATGTTCTTGTCCGACGACACGTTGGGTGAACATCGCGCGATGATTCACGCCGCGAAAAGCAAAGATGCGGAAACATGCGACATGGAAGTCCGATGTCAGTTatgttttgtttcgtttgcttcgttgtcagcgttgaaaaatcacgtAATGAAACATTTTGATGGTAGTAGTATAAAATCAGACGGAACAGTGAAAATTGTACTTGACAGTGTCAAAAACGAATCTGCGAGCCAGCTTGCGGCTGATAATCATGATTGTTGCATATTAGCAGACCTGGAGGGTGCCAATTGTTCTACAGAGGTCAAATTTGAGCCCGACGATGGACCGGCAGGAGATCCATGCGACGGATCACTGTCCACGGACGAAGTTGCGGACATCAACGGTAATAACGTGATCGTGCGGTTAAATTTGAATGGAAATAACGATCCGGAGTATGAATCTGATGTTTTCCATTGCATCAGAAAGCATGTATCGGACAGAGCAACAAATAAATCCAAAGTTAGGTATTGCTGTGAAAACTGTGATAAAGTATTCGCGCACAAGCACGATTATACGTTACATTTGAGACGTCATCTCGGCCTAAAACCTTTCAATTGTATTTTTTGCGACAAGACATTCATCACGAATGCCTCAAGAAAAGAACACGAACGAACTCACAccggtgaaaaattattcgtctgCATGATGTGCGGTAAAAGTTTTGTCAGGAAATCAGAGCTCAAGTATCACGAGGGTATTCACACCAACAAGCCAACGACGTGTACCGTTTGCAATAAACGTTTCAGCAACGTTCAGTCGTACAAAATGCACATGAAACGTCATATATTCGGTAGCCGATACGTATGTGAGATTTGTGGGAAAAGTTATTACACGAACTCCGAATTATCGAGGCACGTTCAGATACATTCTGGAAAACGTGCGTTTCCCTGCGATCTGTGTCAGACTTCATTTTTGTCCCGACCCGAATTGAACAGGCACTTGAAGTATCATATAGGCGAGAAAAAGTTCCGGTGCCAAGTATGCTTCAAGACTTACTTCGAGTCTGGACATTTGAAAATACACCAGCGAATCCATACCGGTGAAAAACCGTTTGCTTGTAACATCTGTAGCAAAGCTTTCATCACGAAACCGAAACTGATAAGGCATTCTAAGGCGCACTCGAAAGAGCGAACGATCATTAATGATGTAgatgaaaatcaacaaaaGAAAAGTCAACTCGCCGACGATATAGCATAA
Protein Sequence: MAMGESYCEKIDEICRVCLKRDDCMECIFETVDVDNGELSIAQRIATIARVQIHQLDGLPALICHTCRSQVDKSYNFQLLVEISDRSLRHYLDSGESEEVTVKEESSDKSSQTSDEENMDLENFLLENDITNHSDISVVFFQSEDGATAVDICNIGESEKLDLENERSTSSVGARKGEFANTTLTKHATGKLDDEEISGLERLLTSNKMYLERTPPKVHRIYTCNDCDEMFLSDDTLGEHRAMIHAAKSKDAETCDMEVRCQLCFVSFASLSALKNHVMKHFDGSSIKSDGTVKIVLDSVKNESASQLAADNHDCCILADLEGANCSTEVKFEPDDGPAGDPCDGSLSTDEVADINGNNVIVRLNLNGNNDPEYESDVFHCIRKHVSDRATNKSKVRYCCENCDKVFAHKHDYTLHLRRHLGLKPFNCIFCDKTFITNASRKEHERTHTGEKLFVCMMCGKSFVRKSELKYHEGIHTNKPTTCTVCNKRFSNVQSYKMHMKRHIFGSRYVCEICGKSYYTNSELSRHVQIHSGKRAFPCDLCQTSFLSRPELNRHLKYHIGEKKFRCQVCFKTYFESGHLKIHQRIHTGEKPFACNICSKAFITKPKLIRHSKAHSKERTIINDVDENQQKKSQLADDIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -