Basic Information

Insect: Arge pagana
Gene Symbol: prdm10
Assembly: GCA_963969455.1
Location: OZ018309.1:5346194-5350659[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00018 0.013 15.9 0.8 2 23 479 500 478 500 0.96

2 14 3.8e-07 2.8e-05 24.3 1.0 1 23 534 556 534 556 0.98

3 14 0.0065 0.49 11.0 1.3 1 23 564 587 564 587 0.97

4 14 0.00075 0.057 13.9 0.2 2 23 605 626 604 626 0.96

5 14 0.0019 0.14 12.6 0.1 2 23 639 660 638 660 0.94

6 14 0.066 5 7.8 5.4 1 23 677 699 677 699 0.91

7 14 0.061 4.6 7.9 2.1 2 23 708 729 707 729 0.96

8 14 0.01 0.76 10.3 0.2 1 23 736 758 736 758 0.98

9 14 0.00052 0.039 14.4 4.8 1 23 765 787 765 788 0.95

10 14 0.049 3.7 8.2 5.6 1 23 793 815 793 815 0.98

11 14 2.6e-05 0.0019 18.5 2.7 1 23 821 844 821 844 0.97

12 14 0.0018 0.14 12.7 1.7 1 23 877 900 877 900 0.97

13 14 0.00014 0.01 16.2 2.4 1 23 922 945 922 945 0.97

14 14 0.0041 0.3 11.6 3.4 3 23 983 1004 983 1004 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00018	0.013	15.9	0.8	2	23	479	500	478	500	0.96
2	14	3.8e-07	2.8e-05	24.3	1.0	1	23	534	556	534	556	0.98
3	14	0.0065	0.49	11.0	1.3	1	23	564	587	564	587	0.97
4	14	0.00075	0.057	13.9	0.2	2	23	605	626	604	626	0.96
5	14	0.0019	0.14	12.6	0.1	2	23	639	660	638	660	0.94
6	14	0.066	5	7.8	5.4	1	23	677	699	677	699	0.91
7	14	0.061	4.6	7.9	2.1	2	23	708	729	707	729	0.96
8	14	0.01	0.76	10.3	0.2	1	23	736	758	736	758	0.98
9	14	0.00052	0.039	14.4	4.8	1	23	765	787	765	788	0.95
10	14	0.049	3.7	8.2	5.6	1	23	793	815	793	815	0.98
11	14	2.6e-05	0.0019	18.5	2.7	1	23	821	844	821	844	0.97
12	14	0.0018	0.14	12.7	1.7	1	23	877	900	877	900	0.97
13	14	0.00014	0.01	16.2	2.4	1	23	922	945	922	945	0.97
14	14	0.0041	0.3	11.6	3.4	3	23	983	1004	983	1004	0.98

Sequence Information

Coding Sequence: ATGGATCCTGGGGGCCCTCCTGAGGGGGCCCCTGGCGACCCCATGGAAATGGTTGGCATCGACAAAGTGGTAATAGATGTTGGTGAAAATTGGACTAATGAAAACATCTCTCCTCCTGTATCTGatcagcgaagaaaaatgaacaataGGCATTTATATTCGAATGTCGAGGATACAACCAAACTTTTCTCTCGTATATTTTCCTTAGCCTGCGAACAAGTTCCATTCTCTCCTAGAACCTCCTCCCCTTTTTCCGATTTTGAACATCGAGTAAGTCCGCTCGATCCAAATATGAGTTCCACCGCAAGATATTCACCGACGCCCGTTCAACTACCTCCTTCACCTTTCCATAGCTCGGTCGTCGTTCTTCAGGACCCATCTTCACCCCTAATTTCTACTTCCGATCAAGATGTACAACCGAACATTAATTATGTCACGCAATTGACTGACCAAGCTGCTACACAAACTGTAGTGCAAACCGTTAACGCTTCAgattttgttgtcgttggaAACGACGAAGGTCTCGACACTGGCGTTAACGGAGAATTAATATTAATGCAAAGTACGGGACCAGAACTGGAAAATTCTACTGCACCGTTGATGTTATCTGGCATACCGAGCACAGACTTTGCATTGACCCGAGATTTTCTAGTAACACACGACGAACAATTTAACGTGATGGGCTCGTACAAAAATCAAACTATAGACATTGGGGACGTAAAGACGAATAAAGTTCAAAATGATTCGGAGATGATAGACAATAATGAAATCGATAAGATTTTTTCCGATGCTTCTAAAGAGGATGCTTTGAAAGTCAGCGAAAAGAAAGGCTTGCGACGCTCGAAACGTCATATCGGCGATAAAAAGATGTCAAGTTGTAGAAGATGTGATGCGGATTGCATTGATACTGAAAATTGTACACAGCACAATGTTCAGACAATTGCGGATCAACCTGTACCCTCCAGAGCTCGAGCCACCTTACCAGGATCCTATCTTACGATAAATAAGTTGCCAGCATCCAACAGTGTGCAAAAAGATACGATTTATGGTGTATTCGCAAAGCGTCACATTTTAAGACGTACGCAGTTTGGACCCATTGAAGGAATTCTGTATGCAAATGAAGGAACAGTTGCTGATGACTCGTTGCCGCTGTTATATGAAACGAGCAACGGGGAATTGTTGAAGATAGACGTTTCCAACGAAAATGCATCGAATTGGATGCGCTTCGTCCGACGGGCCATGACTTACAAAGAACAAAACTTAATGATCAGTCAACAAGGCGAGGGTATCGTATTTCTCACCGTGAGAAATATCGCGCCTAAAGAAGAACTGAGAGCAGGACCCAGTCCGGATTATGCCGCCCGTAGAAACTTACCGCTGTTGGTCCCAGATCCAAAGGATGAAATGGaATTAAACAATCAAAGAAACCCATGGCCGTGCTTCGAGTGCAATCAACGATTCTTCTCTTCGGAAAAACTGCAAAAACATCTCAATGTTCACGATGGTCCAAGAAATGATGTTAAATCTCgcaataaacgaaaaaaaattcacactcCATCAAATAAATACTTCAGGGTCATAGATGGGCAAACGGTTGTTTACACGTGTCCGTACTGCTCAAAAGATTTTCCAAGAAGTTACAGCTTGAAACGGCACTTGTTGATTCATCCTGGTGCTAAAGCACCTCGTTACGAGTGTCAAATTTGTGgggaaaattttttacatccGTACAATCGAAGTCGACACGTAAAGATATTCCACAGTAACAGTtcaaaagagaaagagaatacGAAGCAAAACTCTACCGAGTGGAAGTGTTTGACGTGCAAGTTGACGTTTGCCCAAGCGTCATTGTTGAATTTGCATACTTTGGTTCACGACACGAATAACGTTAAAGCTGTCGAGCAGTCGTTGAGTTGTCCTCAATGTGGttcggaatttgaaaaacaaaacgactTGATCCGTCACGTGGCAGAACACGGCAAACTGCTATTACCAAAAGCAGCAAAAATCGCACCATCAGCTGCTCATAAATGTTCCATGTGTTACAAGCGATTTGCTACAAAAGTGCGATTGCAACAACATTGCTTGGTACATGGTGCCGAAGAACAGAAACCGCTGCCCTGCAACATCTGTATGAAACGATTTATGAACAATTCAGCGCTCTCGTGTCATTTAAAAACGCACCGACagGATAAACAAATATTCGAGTGTCCCATGTGCAGACAACTGTTTGATCAAGTTTTGACGCTGAAAGATCATATCGAAACGCATCGAAACGAAGACACCAGTTTCAGTTGTCCTCATTGTTCACGATCGTTTACGAAATATTCGGTTATTCGGAAGCATATCAGAGCACATCACTGCGAAAGAAAGCACAAATGCCAATTTTGCATCAAATGTTTCCCCACGCTTGACAAGTTACGAATGCATTTGCTGCGCCATTCGGATCACAGAGAGTTTCGATGTGCCAACTGTGAGAAGCAGTTTAAAAGAAAGGATAAGTTGAAAGAGCACATGACCAGGATGCATTCCGCTGAACGCGAAAATCAACAATCCACGATACAGGGACAGCAGGCTAAGAAATTCGTTCCAAAGGTTAATCCGACGGATTATAATCGTTTCATTTATAAGTGTCATCAATGTCTCGTGGGATTTAAAAGAAGGGGTATGCTAGTGAACCATCTTGCCAAACGGCATCCAGACGTTTCCCCGGAATCTATTCCCGAGTTGAATTTACCAATCTTACGACAAACTAGGGATTATTACTGCCAGTATTGTGAAAAGGTGTACAAAAGTAGCAGTAAAAGAAAAGCCCATATCATGAAAAACCACCCGGGGGCTGCTGTACCGCCGAGTAATCGTCGAAAAGAGGCAGATGCCCCCGGAGTTCCAAATCCAACTTTCACTCAGACAGTAGGCAGCGTTACCACGTCACCGCAAGGTTGTCAATGGTGCCATAAACAATATGCAAGCAAGGCAAAACTTTTGCAACATCAACGGAAGAAGCATCCAACGCTTATGGAACCCGCCGATCAATTACCCCGTCCTCGAACACGACATTCTCAGAatcaaaatattcattcgactCTTACCGACAATAATTTCCTGATGTCCGACTATATTCAAACGTGCGAGCTAGATACCGATTTCCTGAAGCCGaaagtaataaaaatcgtGGATGGTGTCGACCTGATTGGCAATGGACTCGAAATGGTTGACCAGCAATTTTTGCGAATGCGTGATATACGTTGA
Protein Sequence: MDPGGPPEGAPGDPMEMVGIDKVVIDVGENWTNENISPPVSDQRRKMNNRHLYSNVEDTTKLFSRIFSLACEQVPFSPRTSSPFSDFEHRVSPLDPNMSSTARYSPTPVQLPPSPFHSSVVVLQDPSSPLISTSDQDVQPNINYVTQLTDQAATQTVVQTVNASDFVVVGNDEGLDTGVNGELILMQSTGPELENSTAPLMLSGIPSTDFALTRDFLVTHDEQFNVMGSYKNQTIDIGDVKTNKVQNDSEMIDNNEIDKIFSDASKEDALKVSEKKGLRRSKRHIGDKKMSSCRRCDADCIDTENCTQHNVQTIADQPVPSRARATLPGSYLTINKLPASNSVQKDTIYGVFAKRHILRRTQFGPIEGILYANEGTVADDSLPLLYETSNGELLKIDVSNENASNWMRFVRRAMTYKEQNLMISQQGEGIVFLTVRNIAPKEELRAGPSPDYAARRNLPLLVPDPKDEMELNNQRNPWPCFECNQRFFSSEKLQKHLNVHDGPRNDVKSRNKRKKIHTPSNKYFRVIDGQTVVYTCPYCSKDFPRSYSLKRHLLIHPGAKAPRYECQICGENFLHPYNRSRHVKIFHSNSSKEKENTKQNSTEWKCLTCKLTFAQASLLNLHTLVHDTNNVKAVEQSLSCPQCGSEFEKQNDLIRHVAEHGKLLLPKAAKIAPSAAHKCSMCYKRFATKVRLQQHCLVHGAEEQKPLPCNICMKRFMNNSALSCHLKTHRQDKQIFECPMCRQLFDQVLTLKDHIETHRNEDTSFSCPHCSRSFTKYSVIRKHIRAHHCERKHKCQFCIKCFPTLDKLRMHLLRHSDHREFRCANCEKQFKRKDKLKEHMTRMHSAERENQQSTIQGQQAKKFVPKVNPTDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVSPESIPELNLPILRQTRDYYCQYCEKVYKSSSKRKAHIMKNHPGAAVPPSNRRKEADAPGVPNPTFTQTVGSVTTSPQGCQWCHKQYASKAKLLQHQRKKHPTLMEPADQLPRPRTRHSQNQNIHSTLTDNNFLMSDYIQTCELDTDFLKPKVIKIVDGVDLIGNGLEMVDQQFLRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -