Apag002755.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- -
- Assembly
- GCA_963969455.1
- Location
- OZ018308.1:22410414-22412258[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.031 2.3 8.8 1.3 3 23 120 140 118 140 0.96 2 13 0.0046 0.35 11.4 4.5 1 20 214 233 214 236 0.94 3 13 0.21 16 6.2 4.4 1 23 245 268 245 268 0.95 4 13 0.0022 0.17 12.4 1.0 1 23 277 299 277 299 0.97 5 13 0.0063 0.47 11.0 8.8 2 23 333 354 332 354 0.97 6 13 0.0084 0.63 10.6 3.9 1 23 364 387 364 387 0.97 7 13 0.026 2 9.0 2.1 1 23 400 423 400 423 0.94 8 13 1.4e-06 0.0001 22.5 1.3 1 23 429 452 429 452 0.96 9 13 0.014 1 9.9 0.8 3 23 459 480 457 480 0.94 10 13 0.00051 0.038 14.4 0.6 1 23 485 508 485 508 0.97 11 13 1.9e-08 1.5e-06 28.3 0.4 2 23 515 536 514 536 0.97 12 13 6e-07 4.5e-05 23.6 0.9 1 23 542 564 542 564 0.98 13 13 1.8e-07 1.3e-05 25.3 0.3 1 23 570 592 570 592 0.98
Sequence Information
- Coding Sequence
- ATGATGGTAGCGTGCCTGACCCTTAACATCAGTTTTCTTACCATCTGTTTTAGGTTCGCTGCAAGGTGCAGTAGTGTCCAAGCGATGAAGACAGACTCGAGTGGTCGATTCATCGTCGGAACAAATTCAGTTCCGATGCAACTTTGGAAAAGAGTAGACTCGAAGGGCAAACCTTATTATTCCCTGGTCCCAGTGTTGCCGAGATCGTCGACTGCTCCTGATTCGAAGACAGTCGCAATACCGGTAAGCGACATCAAATTGGAGACCAGCGAAGATGCTGTGGTTCCCAACACCACCGAGACTCGCCTCCACGAGTCTTTGGCTCACTTGTGTCAAGTAACTATCGAGTCTTGGGCTTGCGATAGGTGCAAATTAAAATTTCCTCTGGAGCACATGCTGAACAGGCACAAGCTAATGCACACGTGGACACACAAGCTGCTGAGTgccatgaaaatatttctggatCTGGTTCATAAAAATCCACGACATCCTGGAATTTCTACATCTTACAGGAAGACCGCCCGATGCAGACGAGACGCGTTGCGCGCACTGAGCACCTTCGGGTGCCACAAGCGAGGAGCATTTCTGTCACAATTGCGGGGAAAGAACAGAATTCAGAAGTCTGACCCAACGCAGCGGTATCGTTGCGGTCTCTGTGATTTCACTTGTTCGACGAAAAACCACCTGAATGCCCACACCTGGAAACACAGGGATTCGAAGAGGAGTTCCACATTTTCCTGTGATTTCTGCGGCTTCATTTGCAAAAAGAGAACCACCTTCGCCTCACATGTAAGTAGGAAGCACAGAAAACAGAAAGATCCAGGTAAACATCGTTGCGGTACCTGCGACTTCAGAACCAACGACAAGCAAGCCTTGCAAGCTCATGCCAGAGAGCACAAGCAAGATGCGAAGAACGTTGCGGTGGCGTGCACTCGTCGAACAAGGGAGAGTCTAAAGTCTCACGTTGCGAAAAAACATGCTGTCGAGGAGGAGTGCAAGTGCACTGTCTGCGACTTCAAGTGTTCGAAGAAGAGCACTCTGTACTCTCATCAACGCAGGCACagagttttgaaaaacgataGTCAGGTGTACAACTGCAACGAGTGCAGCTTCAAAACCACTAAGAAAACTTCCCTGTACTCTCATATCAAGAGGAAACATAAAATGCCAACTGCTGGTGTGGAAATCGTAGAGTTTTTCTTTTGCAACCAGTGCGATTACAAGAACAAGAACAAATATGAGCTGAAAGTTCACGTCGCTAGAAAGCACACCGACGAATTCAAGTTCTCCTGCGAGACCTGCGGCAagaagttcaaggtcaaaggcGACCTCACCAACCACATCAGGTTCAATCACAAGGAGGGTCCTGTCATTTGCGACGTTTGTGGGAAGACTTGCCTCAACAGCAATTCTTTGTACGTGCATCAGAAATTTGCCCATTACAAGGCTCAGTACGAGTGCCAAATCTGCAAACGACGAATGGTGacggagaaaaatctcaaCGAGCATATGATAAGGCAGCATGAGAAGCGCGAGGACGTTGTATGCGAGGAATGTGGCAAGACTTTCTCAAGAAACAGCCGACTCAAGGTCCACATGCGGATTCACACCGGAGACAAACCCTACACTTGTACCATATGCACAAAGTCTTTTGCCCGGCGTACAGCCCTTAAGCAACATCTCCTCATACACACCGGAATTCGACCCTACGTTTGTGATATTTGTGGGAAGTCCTTCACCCAGAAGCCAGGACTTATAAGCCACAGGAAGTCGCATCCAGGAACGCATCCACCTTTGCCCAGAGTCCTCATCGATCACATATTGAACGAtgtcatgaataattga
- Protein Sequence
- MMVACLTLNISFLTICFRFAARCSSVQAMKTDSSGRFIVGTNSVPMQLWKRVDSKGKPYYSLVPVLPRSSTAPDSKTVAIPVSDIKLETSEDAVVPNTTETRLHESLAHLCQVTIESWACDRCKLKFPLEHMLNRHKLMHTWTHKLLSAMKIFLDLVHKNPRHPGISTSYRKTARCRRDALRALSTFGCHKRGAFLSQLRGKNRIQKSDPTQRYRCGLCDFTCSTKNHLNAHTWKHRDSKRSSTFSCDFCGFICKKRTTFASHVSRKHRKQKDPGKHRCGTCDFRTNDKQALQAHAREHKQDAKNVAVACTRRTRESLKSHVAKKHAVEEECKCTVCDFKCSKKSTLYSHQRRHRVLKNDSQVYNCNECSFKTTKKTSLYSHIKRKHKMPTAGVEIVEFFFCNQCDYKNKNKYELKVHVARKHTDEFKFSCETCGKKFKVKGDLTNHIRFNHKEGPVICDVCGKTCLNSNSLYVHQKFAHYKAQYECQICKRRMVTEKNLNEHMIRQHEKREDVVCEECGKTFSRNSRLKVHMRIHTGDKPYTCTICTKSFARRTALKQHLLIHTGIRPYVCDICGKSFTQKPGLISHRKSHPGTHPPLPRVLIDHILNDVMNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -