Basic Information

Insect: Arge pagana
Gene Symbol: -
Assembly: GCA_963969455.1
Location: OZ018310.1:5551261-5553652[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.7e-05 0.0028 18.0 1.5 1 23 291 313 291 313 0.96

2 12 0.0007 0.053 14.0 2.8 1 23 317 339 317 339 0.98

3 12 0.00011 0.0083 16.5 2.8 1 23 344 366 344 366 0.96

4 12 0.0017 0.12 12.8 6.1 1 23 418 440 418 440 0.98

5 12 0.0014 0.1 13.1 2.1 1 23 445 467 445 467 0.97

6 12 0.0001 0.0076 16.6 2.2 1 23 517 539 517 539 0.98

7 12 0.00054 0.04 14.3 1.2 3 23 548 568 547 568 0.97

8 12 1e-06 7.5e-05 22.9 2.1 1 23 579 601 579 601 0.96

9 12 0.00012 0.0087 16.5 1.2 1 23 607 629 607 629 0.97

10 12 0.00016 0.012 16.0 0.7 1 23 635 657 635 657 0.98

11 12 1.1e-05 0.00086 19.6 1.4 1 23 663 685 663 685 0.96

12 12 8.6e-05 0.0064 16.9 0.3 1 22 691 712 691 712 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.7e-05	0.0028	18.0	1.5	1	23	291	313	291	313	0.96
2	12	0.0007	0.053	14.0	2.8	1	23	317	339	317	339	0.98
3	12	0.00011	0.0083	16.5	2.8	1	23	344	366	344	366	0.96
4	12	0.0017	0.12	12.8	6.1	1	23	418	440	418	440	0.98
5	12	0.0014	0.1	13.1	2.1	1	23	445	467	445	467	0.97
6	12	0.0001	0.0076	16.6	2.2	1	23	517	539	517	539	0.98
7	12	0.00054	0.04	14.3	1.2	3	23	548	568	547	568	0.97
8	12	1e-06	7.5e-05	22.9	2.1	1	23	579	601	579	601	0.96
9	12	0.00012	0.0087	16.5	1.2	1	23	607	629	607	629	0.97
10	12	0.00016	0.012	16.0	0.7	1	23	635	657	635	657	0.98
11	12	1.1e-05	0.00086	19.6	1.4	1	23	663	685	663	685	0.96
12	12	8.6e-05	0.0064	16.9	0.3	1	22	691	712	691	712	0.96

Sequence Information

Coding Sequence: ATGAACTCAAACTATTACGGTTTACCAGTTCATTTAGATAGAGTGTGTAGAATATGCCTTTCGGAAGGTGCAAATTTATCATCAATATTTTGCACTGATCAGGACGTGGAAGATTTTTCTGGTCTTTCAGAAAAGATACAAATATGCGGTTCGATAGAAATTCAAGAGCAAGATGGCTTACCTTCGTTAATCTGTGACGTTTGTATGTACAAGGCTAGCGTTGCTCACGAATTTCGTCAACAGTGTCAAACCTCTGATGCTAGATTGAGGTCGTACTACAATAAACCAGCAAGAGCCAATGCAGTGgaTTCTGCTACGCAAACTgaacaacaattacaaaataCTATCGCACACAAAGCTGTTAGTCCTGAAGGCAGTTACTTTGTCAAACAAGAACTACAGTCTGTTGGATCTCAGGAGCTTTCAAGTACAGTTGAACCATTTGCTGAAGTGCAGGCGTGCATGGACGAGAATAAACTGGCAGAGGAAGTCATGGAGGAGagtaaaatttttatttgcgaCATGGGATTTGATGGTGgcaaggaagaagaagaggagagaacaGAAATATTGGAACAAAATGAACATCATTCAACATTTCCAAATGGAGAAGAATTACAAGAATCGGTGAGTTTGATGGCTATCGAACAGAAAGAGTCACAAGATGAATCGAAAAACATTGACATGTTGGAAGAAGAATATCTTGACGAAGGTTTGTTAAATCATGAAATGGAAGAACAAGAAAAACCGTTCAAGCGCAGCTATAATAGAAAAGCCAAATCTATGCCTACTAAAACTTATAGTGATGATGAGATCGAAGATGATAATTATGATCCAAGTAGTGACAGTCAAGATTCTGAAGAAGTAAAATATAAGTGTAAGATCTGTTCAAAGCGTTACAGAACATTGAAAGGGTTGAAAAAACACGCCCTTGCACatgataaaaaatacaaatgtgACATTtgtttcaaacaattttacaaaatggaaaatatggaaaaacataaaaaaattcatacagCCAAGCCTCACGCGTGTCAATTATGCCATGCCTCATTTTCCAAACCGCAAAGTTTGGTTCGCCACTTGAGATCACATACGGAGAAAGTTAATGATattattaaacaaattaaCACGGATAATCCTAATAGCAAAAAGAGTCTCAAAAAGGTACAACGGAATGAAGAGAACACGGATGATGAAACTGTAGCTACCCAAGAACCagacgaatttgaaaatgctCCAGACTTATATAAATGTCACGTATGCAGTCAATATTGTTCTTCACTACGAAATTTAAAGCGACACACATTGATTCATGGTGACAAAAAATACTCTTGCACCGTCtgtaaaaaatggtttttccgATCTGATACTTTGAAGAAACACGCGGAGAAGCATGGTCACGGTCTGTTGGATAACTTAGTAGAGGATAATAAGCTGTTCGATTCGGATGATGATCCACTAGCAGATCAATCTGATAGTTTGGGTAACATCAATAACGACAGTGTTAAGAGGGATGGAAGTGACGAGGATCGTACTGGAGAATACAAATGCCAGCATTGTGACAAAGTCATGGCAACAAAGAAAGGTTTGAGACGGCATGTTTCCATGCATAAACCCAAAGCCGAACCAGCAATGTgcgaaatttgtaaaaaagtaTGCGCAAGTCAAGCCCGATTAGCATTGCATCAAAAAACACATAATAAACCCAAAGAAAAAGTGCCTCGAGAATATCTCTGTCACATATGTAGTAAAGTTTATCCAAGTAATTCCTCGCTCACGTACCACATGAGAACTCATACTGGTGTCAAGCCACATGTTTGTAAAATATGCAACAGCGGTTTCACAACAACGACAAGTTTGGCCAATCATCTTCGAATACACACGGGCGACAAACCGTTCGTGTGTCACGTGTGTAGTGCAGCATTTGCAGTGAGTTCAGCGTTCAGACGACATCTCACTCGTCATACTGGAGAAGCAAATTACCTGTGTAAGACTTGTGGAAAAGCTTTCAAACGATTGGGTACATTGAAGGaacatacatatacacattCGGGTGAAAAGCCGTATGTTTGTAAGACATGTGGAGCAGCTTATAGTCACAGTGGAAGTCTATTCGCTCATCAGAAACGTTGCCGTGTCCAGAATGGAGAAATGATCGTCGAGGACCACCATCACACAGTAGCGCATCATATTCATGTTACTAATGTGTCTTCAGCTGTACGGTCTCTTACTGTTATTGGTCAGATGTTTTGA
Protein Sequence: MNSNYYGLPVHLDRVCRICLSEGANLSSIFCTDQDVEDFSGLSEKIQICGSIEIQEQDGLPSLICDVCMYKASVAHEFRQQCQTSDARLRSYYNKPARANAVDSATQTEQQLQNTIAHKAVSPEGSYFVKQELQSVGSQELSSTVEPFAEVQACMDENKLAEEVMEESKIFICDMGFDGGKEEEEERTEILEQNEHHSTFPNGEELQESVSLMAIEQKESQDESKNIDMLEEEYLDEGLLNHEMEEQEKPFKRSYNRKAKSMPTKTYSDDEIEDDNYDPSSDSQDSEEVKYKCKICSKRYRTLKGLKKHALAHDKKYKCDICFKQFYKMENMEKHKKIHTAKPHACQLCHASFSKPQSLVRHLRSHTEKVNDIIKQINTDNPNSKKSLKKVQRNEENTDDETVATQEPDEFENAPDLYKCHVCSQYCSSLRNLKRHTLIHGDKKYSCTVCKKWFFRSDTLKKHAEKHGHGLLDNLVEDNKLFDSDDDPLADQSDSLGNINNDSVKRDGSDEDRTGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPAMCEICKKVCASQARLALHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHLRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLGTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQNGEMIVEDHHHTVAHHIHVTNVSSAVRSLTVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -