Basic Information

Insect: Arge pagana
Gene Symbol: -
Assembly: GCA_963969455.1
Location: OZ018311.1:14613149-14616539[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.018 1.4 9.5 0.2 6 21 12 27 6 28 0.86

2 14 3.6 2.7e+02 2.3 0.0 2 20 34 52 33 54 0.87

3 14 0.51 38 5.0 0.3 1 12 224 235 224 244 0.89

4 14 0.02 1.5 9.4 4.9 1 23 353 375 353 375 0.98

5 14 6.8e-06 0.00051 20.3 1.6 2 23 379 400 378 400 0.98

6 14 0.00014 0.01 16.2 2.1 1 23 411 433 411 433 0.98

7 14 0.0073 0.55 10.8 0.3 1 23 452 473 452 473 0.90

8 14 0.00022 0.016 15.6 0.1 2 23 479 500 478 500 0.95

9 14 5.6e-05 0.0042 17.4 3.7 1 23 526 548 526 548 0.99

10 14 2e-06 0.00015 22.0 3.7 1 23 554 576 554 576 0.96

11 14 0.00012 0.0089 16.4 4.4 1 23 582 604 582 604 0.98

12 14 1.4e-06 0.0001 22.5 0.8 1 23 610 632 610 632 0.98

13 14 8.7e-05 0.0065 16.8 0.2 1 23 636 658 636 658 0.99

14 14 0.00037 0.028 14.8 0.2 1 23 666 688 666 688 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.018	1.4	9.5	0.2	6	21	12	27	6	28	0.86
2	14	3.6	2.7e+02	2.3	0.0	2	20	34	52	33	54	0.87
3	14	0.51	38	5.0	0.3	1	12	224	235	224	244	0.89
4	14	0.02	1.5	9.4	4.9	1	23	353	375	353	375	0.98
5	14	6.8e-06	0.00051	20.3	1.6	2	23	379	400	378	400	0.98
6	14	0.00014	0.01	16.2	2.1	1	23	411	433	411	433	0.98
7	14	0.0073	0.55	10.8	0.3	1	23	452	473	452	473	0.90
8	14	0.00022	0.016	15.6	0.1	2	23	479	500	478	500	0.95
9	14	5.6e-05	0.0042	17.4	3.7	1	23	526	548	526	548	0.99
10	14	2e-06	0.00015	22.0	3.7	1	23	554	576	554	576	0.96
11	14	0.00012	0.0089	16.4	4.4	1	23	582	604	582	604	0.98
12	14	1.4e-06	0.0001	22.5	0.8	1	23	610	632	610	632	0.98
13	14	8.7e-05	0.0065	16.8	0.2	1	23	636	658	636	658	0.99
14	14	0.00037	0.028	14.8	0.2	1	23	666	688	666	688	0.97

Sequence Information

Coding Sequence: ATGGGATCGTTAAATCTGATATGCCCTATGTGTTGCGGAGAATCGTTCAACAATCCACAGTCATTGAAGTATCATTTGCTAAGTATAACGGACAATTTGTACTGTCCTGGTTGTTCGCAGCGTTCCGATTCTGTTTTGGCTTTAATACAGCATTTGGAACGATGCGGTCAATCTCCCGAACCAGAGTCGAACCCTTTGATAGAAACGAACGTTGAACAAATCAATCAGACTTTTTTGGCAACTGTCAATGACGACGGCATTATGATCGTCGAAGATTCACGAGATATCCAAGTTGGCGACAATGGAGAAATAAATGTAGTTGATAAAATGGATGTTATGGAGGAATCAGCCCAAATTCTGAATTCTGAAGCAAAGGATTGTCAAACATCTGTGCCTCCAGTTGCGGATTCCATCGACGGATCCTCGAATCCAGTTCCATTGGTCGAACTGGCTAAAGATGATACAGAGGACATGGAAGATAAGAATGCATCTACCATTGTACCGAGTAGGGATGGATTCCTAGGTGAGAGTGCTGGAAATTTGATTGATGGGTCACATGATCTGATACAACACGTGGATGAGGTTCATAATCTCAACGAATCAGGATTACTCGGAATTAAAGAAGAACTCTGCGAGGTAAAACTGGAAGAGCTAGAGGCCGACGCACTTTACAGTTGTAGCAGCTGTGGGATGAGCTTCAACTCCGTTTTGGAACATATTAAACAATATCACGATGGTCAAGAAGTCGTGTTAGAAATGGCTGAACAACAGTTAGAGATCCAACCTGCACCACCGGTTTCTCCACCCATTGAAGAACCACCCTCTGTAGTAACAAATCGTCAACGTCAAATGATGAACACTCTGAGAACAGAAGAATGCGTAGACAGCGAAGGCCGACTTTATACGAGAAAAGTTGTACAGATTGAGAGATTCTGGGATCATCCACCATCATCCTCGCTTCCTTCTACCAAAGCTCCTATGATAGAAAAATTCTTCTCAAACGTAGAAGGAGTCAAGGTTCGCGAGAAGAACTTACCCTCGGGGCCCACTCGAATGTATCGTTGCAATCATTGTCTCgaacattttgcaaaattagCCGATTTTAGAGTTCACGTGTGCGTACATGGGAATAATCAATGTGGTCATTGCGACCAGGCGTTCGCAACGGCAAGAGCATTACAGCATCATATGAAAGTTCACGAACTGGACGAAGCTGGCGTACAACGCTCTTTTGTCTGTGCAACGTGTGGTACTGAGTTCTCGTCACATAAAAGTTTGAGATTACACTCGCGGATGCACGCACCGGTGAGAGCAAGGCACGTTGACGCTCCTGAAGGCACGCACAATGCAACATTCACTTGCCCGGAATGCGGAAAAACTTTATCTGAGTCGTATCGATCAACGCATATGGCTTTACATTCCGGTGGCTCAGTTACTTGCACGATTTGcaatcgaaaatttgattcTTCTGATAGTTTGGCCATGCATGCAGCAGTTCATACAGAGTTAAGTCAGTCGCATTCGCCGACGCCTCCTAGGAATGAAGGAAATGAAACCGTGGATGCGCAGAAGCCCTATCAGTGTCAGCATTGCGGTCGACGTTTTGCGAGACCACACGAAAAAGTAAAACACGAACGCATACACACTGGGGAAAAACCACATGCGTGTGAGGTGTGTGGAAAAACTTTCCGAGTATCGTATTGCCTCACTCTGCATATGCGAACGCACACGGGTGTGCGTCCTTACGTTTGTCAGCACTGTGGCAAGAGATTTAAAGCCTCCTCGGTCTACAATCACCATCTCCTTACCCACGGTGAAGAGAGAGCCTACACGTGTCCTTACTGCCCGAAAACGTTTAAAACTCGCGTGCAGCTTGCTGGTCACAAAAATAGCCATACTAAACCCTTCAGATGTACAGAATGCTCAAGACCTTTCGCATCGTTGTACGCAGCTCGCGCTCATATACAGACTCATAAGAAAGACAATAATTTAAAGTTCAGTTGTTACATATGTGGAGCCTCATATGGTAGAGCATTCGCGCTGAAAGATCACTTAAAACAACACGGTCAAGACGTACTTGCTCCTCCTGAACCGGCCAGAGAAGAGGAGATTCACGAAGGTAATGACTTTTTGCTCGTAGAAGAGGAAGCTGAAGATGACGAGCTAATAATTCCTTCGCCAGCGCCGGTTGCCCATTCTTCGGAAGCAGAAGAATCGGATTGA
Protein Sequence: MGSLNLICPMCCGESFNNPQSLKYHLLSITDNLYCPGCSQRSDSVLALIQHLERCGQSPEPESNPLIETNVEQINQTFLATVNDDGIMIVEDSRDIQVGDNGEINVVDKMDVMEESAQILNSEAKDCQTSVPPVADSIDGSSNPVPLVELAKDDTEDMEDKNASTIVPSRDGFLGESAGNLIDGSHDLIQHVDEVHNLNESGLLGIKEELCEVKLEELEADALYSCSSCGMSFNSVLEHIKQYHDGQEVVLEMAEQQLEIQPAPPVSPPIEEPPSVVTNRQRQMMNTLRTEECVDSEGRLYTRKVVQIERFWDHPPSSSLPSTKAPMIEKFFSNVEGVKVREKNLPSGPTRMYRCNHCLEHFAKLADFRVHVCVHGNNQCGHCDQAFATARALQHHMKVHELDEAGVQRSFVCATCGTEFSSHKSLRLHSRMHAPVRARHVDAPEGTHNATFTCPECGKTLSESYRSTHMALHSGGSVTCTICNRKFDSSDSLAMHAAVHTELSQSHSPTPPRNEGNETVDAQKPYQCQHCGRRFARPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYVCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHGQDVLAPPEPAREEEIHEGNDFLLVEEEAEDDELIIPSPAPVAHSSEAEESD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -