Apag002754.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- -
- Assembly
- GCA_963969455.1
- Location
- OZ018308.1:22406825-22410025[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0002 0.015 15.7 0.3 1 23 88 110 88 110 0.98 2 17 2.4e-05 0.0018 18.6 1.2 1 23 116 139 116 139 0.91 3 17 0.00014 0.011 16.1 0.9 1 23 175 197 175 197 0.94 4 17 0.0052 0.39 11.3 3.8 2 23 203 225 202 225 0.93 5 17 0.0017 0.13 12.7 0.9 3 23 234 254 232 254 0.97 6 17 8.8e-06 0.00066 20.0 4.6 1 23 258 280 258 280 0.98 7 17 0.00049 0.037 14.5 0.8 3 23 288 308 286 308 0.95 8 17 0.00018 0.013 15.9 0.9 1 23 314 337 314 337 0.95 9 17 0.0052 0.39 11.3 0.5 1 23 570 593 570 593 0.96 10 17 0.0028 0.21 12.1 5.4 1 23 599 621 599 621 0.91 11 17 0.072 5.4 7.7 5.0 1 23 630 653 630 653 0.94 12 17 0.00078 0.059 13.8 1.8 1 23 659 681 659 681 0.96 13 17 9.4e-06 0.00071 19.9 2.3 1 23 686 709 686 709 0.96 14 17 0.0045 0.34 11.4 3.7 1 23 715 737 715 737 0.98 15 17 1.7e-07 1.3e-05 25.3 0.4 1 23 741 763 741 763 0.98 16 17 0.00055 0.042 14.3 3.0 1 23 769 791 769 791 0.98 17 17 4.8e-05 0.0036 17.6 2.4 1 23 797 819 797 819 0.97
Sequence Information
- Coding Sequence
- ATGaaaatatggagaaaaaagggtTTCAAGCTAGGAATCAACGCTGTTGATCTTCCTGCTCCACCGCCACCTGCCGAGGCAACCGCTGTGAAGACGAATGACACTTCAACCCAGCGACGAGTTAAGCCGGAAGAGTCTTCGGTGAGCGAAAGCGAGTCGGAGTCCCTCGATCCGGAGACCAATGATTCTGATTACGTTCCAAGCGAAgaagaatcgaagaaaaagcCTAGAGCGGCTAAAGAAAAAATGCCAAAGATCGAGTACACCTGTGAATTGTGTGACGTTACCTACGAAAGGAAAGGACCGTACAACAAGCACATGGCCAGACACAACAACGTGAAGAGATTCGAATGCGAGACTTGTGGAACCAGATTCAAGTATAATTCTGGATTGAAAAAGCACAGGGTCGAACAGCACAGCGAAACCGCACCGAAATACTACTGCGAACTATGTCCATTCGTCACGAAGCACTATCCCTATCTACAGTGTCACTTTACAAGGAAACACACCGAGGACTACAAATACGTATGTGGCTACTGTAACAAGAAATTTAAAGTCGAGTCAGACTACAAAACCCACGTGGGCAATCACGAGGCCGCGGAGTGCGTCTGCGACGAATGTGGTCTCACCTATCCGAACAAAAATTCTCTCTATCACCACAAAAACTACAAGCACACTAACAAAGTGAAACTGTTCGGATGCAAGTTGTGCAAGAAGAGGCTGACTAcggagaaaaatttggaaatacatCTTCTCCAGCACCAGCAATCCTATGTGTGCGAGGAGTGCGGTATGAAATTCACCACGAAGCATGGTCTCTGTAAGCATCGCAAGGTACATCTGGGAATCAAATCGCACCTGTGCACTGTTTGCGGTAGAGCTTTCGCTTCCATCACTACCCTCAAGGTTCACTTCCTTACGCATACCGGTGACAGACCTTACCTGTGCAATGTCTGCGGTTCCAGTTACACTCAGAGATCCTCGCTGATGCTTCATTGGAAGAAGAAGCATCCCGATGCTTGCGAACCACCTCCTCCTGTCACGCTCAAAAATGTCCTCGAACCGGTTTATCCCAGCGTCGAGGAGAACCCTGAAGAACAGCAGGTGGACGACTTCCATGCGCATCTACATGAAAACATTGATGTTAAGATTCACGAGAATGTCGACGTCAGGATccacgagaacgaggacgtaGCGAAGCTCCAGGATAAGCTCCGAGACGTGAATATGGACATCGAACCTATCGACGAAGACGTGAAAAAGACTCCCGATGGTAACGCTGACTCCGAACAAAACATCGATGCCATTGCGAAAACGAGTGTCAGCGACGAGTCGAAGTCGTCGCACCGGCATgtgaagaaaggaagaaaaagaacacgCCACTGCGAAGAAATCACGAGGCTACGATGCGATTTGGATGGGGCTGCGAAAGATCCTGGAAGATGTGGCAGCAAGTCCAAATCTGAAACGTCCAAGAATTCGAGTCACGTTAGACCAAGTTTGGAAAACTCTGGGAGTGCACTGGAATTGATAAGGTGCGATGTCGAGCAAACCGAACGGGTAATGGGAAAAGCTACGACGAAGGAGGAATCAGAGGAGAGCGAAACGTCGATGAGCGAGTCTAGAGACGCCAAGGACACAGCGATGAAGAGGAGCCAAGAAAACATAGCGACGGATGTACGATACCTGATGTTGACCGATGGCAATTACACCTGCGATATTTGCCTGGCTAGTTTCGAACAGAAGAACAAAATGCTGCGCCACGTGATCAGCAAGCACAGTTTTCACAGACCATTCAAATGCGACGTGTGTTCCAAGGCCTTCAAGTACAAATGTGACCTTAAAGCACACTGCCTCGTGCACGATACCGTCGATTCGAGCATGTTGCATTACTGCGATCAGTGTAACTACAAGACTAAGGTGAAGAATAACCTGAAGTCGCATTTCATTCGTAAACACACCGACGATTATAAATTTTCCTGCGAACATTGTGGCAAGAGGTTCAAGATGGAATGGGACCTGAAATTTCACATCGGTACGCACAGCGACTCTCGACACATGTGCGACGTTTGTGGAAAATTCTACACCAGCAGTTATTCGCTGTACAAACACAGAAGGGTGGCTCACGTGAACGACTACAAATATCAATGCCACATCTGCAACAAGAGAGTTCTGACCCAGGAAAATCTGGATAGTCATATGCACCAGCACAATCAGACTTATGCCTGCAAAGAGTGCGGCAAAGTTTTCGCCTCCAAACGATACCTCGCCACTCATATGTCGACGCACACTAACACAAAGCCATTTCCTTGCCACATATGTCAAAGAGAGTTCAGGACCTCCCAAATGAGGAATACGCATCTTCTCACACACTCCACCGAGCGTCCACATGTATGTGACCTTTGTGGACAAGCTTTCAAAAGACGCTACTACATGATAGATCACCGGCGAAAACATCCAGACGCACATTTGTCTTCGCCACCGATACCCTTAGGTAAAAACCGAAGTGCATCAGCACACTAG
- Protein Sequence
- MKIWRKKGFKLGINAVDLPAPPPPAEATAVKTNDTSTQRRVKPEESSVSESESESLDPETNDSDYVPSEEESKKKPRAAKEKMPKIEYTCELCDVTYERKGPYNKHMARHNNVKRFECETCGTRFKYNSGLKKHRVEQHSETAPKYYCELCPFVTKHYPYLQCHFTRKHTEDYKYVCGYCNKKFKVESDYKTHVGNHEAAECVCDECGLTYPNKNSLYHHKNYKHTNKVKLFGCKLCKKRLTTEKNLEIHLLQHQQSYVCEECGMKFTTKHGLCKHRKVHLGIKSHLCTVCGRAFASITTLKVHFLTHTGDRPYLCNVCGSSYTQRSSLMLHWKKKHPDACEPPPPVTLKNVLEPVYPSVEENPEEQQVDDFHAHLHENIDVKIHENVDVRIHENEDVAKLQDKLRDVNMDIEPIDEDVKKTPDGNADSEQNIDAIAKTSVSDESKSSHRHVKKGRKRTRHCEEITRLRCDLDGAAKDPGRCGSKSKSETSKNSSHVRPSLENSGSALELIRCDVEQTERVMGKATTKEESEESETSMSESRDAKDTAMKRSQENIATDVRYLMLTDGNYTCDICLASFEQKNKMLRHVISKHSFHRPFKCDVCSKAFKYKCDLKAHCLVHDTVDSSMLHYCDQCNYKTKVKNNLKSHFIRKHTDDYKFSCEHCGKRFKMEWDLKFHIGTHSDSRHMCDVCGKFYTSSYSLYKHRRVAHVNDYKYQCHICNKRVLTQENLDSHMHQHNQTYACKECGKVFASKRYLATHMSTHTNTKPFPCHICQREFRTSQMRNTHLLTHSTERPHVCDLCGQAFKRRYYMIDHRRKHPDAHLSSPPIPLGKNRSASAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -