Apag002746.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- -
- Assembly
- GCA_963969455.1
- Location
- OZ018308.1:22391423-22392643[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00023 0.017 15.5 1.6 1 23 54 76 54 76 0.96 2 12 0.00023 0.017 15.5 3.8 1 23 80 102 80 102 0.96 3 12 1.9e-06 0.00014 22.1 5.3 1 23 124 146 124 146 0.95 4 12 9.3e-05 0.007 16.7 4.4 2 23 152 173 151 173 0.97 5 12 0.00048 0.036 14.5 0.1 1 23 178 200 178 200 0.98 6 12 6e-06 0.00045 20.5 1.0 1 23 208 230 208 230 0.98 7 12 0.023 1.7 9.2 5.0 1 23 236 259 236 259 0.94 8 12 6e-05 0.0045 17.3 0.6 2 23 271 292 270 292 0.96 9 12 2.9e-06 0.00022 21.5 2.0 1 23 298 320 298 320 0.96 10 12 1.6e-08 1.2e-06 28.6 0.2 1 23 326 348 326 348 0.98 11 12 1.2e-07 8.8e-06 25.9 0.9 1 23 354 376 354 376 0.98 12 12 0.00048 0.036 14.5 1.7 1 21 382 402 382 403 0.95
Sequence Information
- Coding Sequence
- ATGCACCTACCGTTGTCCGAAGACTATTACCGAATGATAATGCTTTCGAAGCTAAATCTCATGAGGAAAATTCGACCGAAGCCTGAATCGCAGAAGGGTGGTGGTGAGAACGGAGAGATAAAAAAGGAAATCGAGGACGCTGATGATATCCCATTGGCGTatcgttgcaaaaaatgcGAGGTTTATTTTAGAACGAAGGCATTATTGAAGACCCATGAGATACAGCACAAGGGTAAGCATGCTTGTAAACAGTGCGGACGACTCTTCAGCAAGTACAACACCATGCGACGGCACATGAAGATCCATCGGCGCGACAAGTCCTCGACGCCTGGGCAAGTCCCaacgaagaaggagaagagcgAAGCTGAATTCCTGTGCAAAACCTGCGACAAGGTCTTTCGACACAAGAGCAACTACCAGAAGCATCTACTGCGGCACACCGCCGGAGACCTGACCTGCAACCACTGTCCTAAAAAATTTCGACTCTTTCGGGATCTGACCAGGCACGAGAAGACCCACTTCTCACCGAGCTACATGTGCAAGGAATGTGATTACGAGACTACCGTACTGGCTGCTCTGAGCATTCACATGCTTCGACACACGGACAAGGCTGATTTACCCTTTAAGTGCAACGAATGCGACAAGAGGTTTCGCAAGGTGATAGAACTACAGGAACACTACAACATCCATTCCGGTGACAAACCCTTCACCTGCACCACATGCAACACTTCCTTTTACCTGAGGAGGCAACTCTCGGCTCACTGTAGGCGAATGCATCCAGAAATGAAAGCAAACAAGGTGACGAGCACCACCTGCGACATCTGTGGCAGAGTCCTAGCTACGAAACGATCTTTGTTCCGACACAAGGAGAGCCACAACCCCACTAAACTGTATCTCTGCGATTTTTGTGGCAAGAGCTTAAGCAGCGCTGAACATCTGAAGAAGCATCGGCGCATTCACACCGGGGAAAAACCCTACGTCTGTGATATCTGCGGGAAGGGTTTCACAGACTCCGAGAACCTCAGGATGCATCGGCGTATCCATACCGGAGAGAAACCCTACAAGTGCGATCAATGCCCGAAAGCTTTCTCGCAGCGATCCACGCTCACTATCCACAGACGAGGACATACCGGGGAACGACCTTACATATGCCAAATCTGCCATCGAGGATTCTCCTGCCAGGGCAATCTTACAGCCCATCAAAAATCCACATGCGTTTGA
- Protein Sequence
- MHLPLSEDYYRMIMLSKLNLMRKIRPKPESQKGGGENGEIKKEIEDADDIPLAYRCKKCEVYFRTKALLKTHEIQHKGKHACKQCGRLFSKYNTMRRHMKIHRRDKSSTPGQVPTKKEKSEAEFLCKTCDKVFRHKSNYQKHLLRHTAGDLTCNHCPKKFRLFRDLTRHEKTHFSPSYMCKECDYETTVLAALSIHMLRHTDKADLPFKCNECDKRFRKVIELQEHYNIHSGDKPFTCTTCNTSFYLRRQLSAHCRRMHPEMKANKVTSTTCDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRIHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYICQICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01049097;
- 90% Identity
- -
- 80% Identity
- -