Apag003124.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Arge pagana
Gene Symbol
SCAND3
Assembly
GCA_963969455.1
Location
OZ018308.1:26769378-26771924[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00035 0.027 14.9 4.1 2 23 308 329 307 329 0.97
2 14 8.7e-05 0.0066 16.8 0.8 2 23 440 461 439 461 0.97
3 14 5.8e-06 0.00044 20.5 1.8 1 23 467 489 467 489 0.98
4 14 0.037 2.8 8.6 0.1 1 23 495 517 495 517 0.98
5 14 3.4e-06 0.00026 21.3 1.3 1 23 533 555 533 555 0.98
6 14 6.4e-06 0.00048 20.4 1.2 3 23 563 583 561 583 0.98
7 14 1.1e-05 0.00084 19.6 2.2 1 23 589 611 589 611 0.98
8 14 0.00073 0.055 13.9 0.2 1 23 617 639 617 639 0.99
9 14 6e-06 0.00045 20.5 0.3 1 23 645 668 645 668 0.94
10 14 2.9e-05 0.0022 18.3 1.5 1 23 674 696 674 696 0.98
11 14 7.6e-05 0.0057 17.0 4.6 1 23 702 724 702 724 0.98
12 14 5.7e-06 0.00043 20.6 0.2 1 23 730 753 730 753 0.96
13 14 5.8e-06 0.00044 20.5 0.9 1 23 759 781 759 781 0.97
14 14 3.4e-06 0.00026 21.3 4.5 1 23 787 809 787 809 0.99

Sequence Information

Coding Sequence
ATGAGTGCTGACGAATTGATACAGAATgcaacatatttttcttccggaaAACTTAACCCCAGATGTCAAGTGGATATTATCGACATGAGAGGGGAACAAGCTTTggattataaatttattttagcTTACGAAGATCAAACTTCGAAATTCATTATACTACGTCCCTTGAGGACTAGGGATCCAAAAGAAGTGGCTACAGAATTGCTTGATGTATTTACCATAGTTGGAGCTCCTCGAGTAGTGCAAAGTGGAAATGGTAGAGTGTTTGCGAGTCAAATTGTGCAGGAACTGAGAAGATTATGGGTGGATCTGATAATTGTTCACGGCGAAGTTGAATCCGTTTTCACCACTTCTAAAagagattttttgaaatctgtGAAATTGTGGCTTGAGAAGAATCCCTCGAAATTATGGTCTGAAGCACTtaaatttgttcaatttattgaaaatacaaCATTTTGTTGTGGATCTGCAAAAACTCCCCATGAAATGTTATTCAAAACCAACGAACCAATTATTACGTTTTCTACATCAGGACATATTCTAACAAAAATATGGACGGAAGAAGATTGGGATCAATTAATAACAAGCCAttcaaaaaatggtgaaaacaTTAATTTCACCTCGAACTCAAAGCAGCAGGACAGTAACttaaatagaaataaaatcaccAGCGAATTGCGATTTCAGTTTGAGGAAACCAACTCAGACGAAGATAATCGAAATGATCGCCAAGATGctgaacaattgaaaaaaaacagacgatTGATCACCAGTTGTGAAATTTCTAGTGGTTTCAAGTTCGTAAATGTTAAAAGTGGAAATTCCATCCATGTTGAGCATGCCGAAGATTCACAATCAGGAAGTGAAGGACACTCTGCCAGCGAAAGTAAATCCAAGCCAACtgagaaatatcaattgaaGTGTAAAATTTGTCAGAAACGCTATATGAAATTGGGTCACTTAAAAAATCACCTTAAATCTCATACAAAGGCCAACGGTTTCGAATGTACTATATGTTGCAAAAAATTTCGGCTCGCAAAGGTTCACGATCAACACATGCGTAGATTTCATAATTCAAATACCGCTCTGAAAATAAGCGAAAATGTGTGTCTGAAAGAAAGTCTAAAAGGTGATCTAGAGGACAATTCAAAATCTACGAGACTCAGTGAAGAGAAATGTGACATTGAACCCCCGGAAAATTCTCGTATTCGTAAAGAAACGAATCATAAAACGCAAAAGCGATTGCAACGGTCAGGGAACAATAGATTGTCTAAGGAACTTAGATCTACGAAGTTTAATAATACATCGTTGTTAGAATGCAGTTATTGCCAACAGAAATTTGACTTTCCAAGTGTTTTAAAGAGGCACGTCAGATCGCACACTAACGAACGACCGTACGTTTGTGAAGTATGTAACAAAAGCTTCAAACAATTAGGGCATCTCAGTCAACATTCATTGACGCACACGGACTATCGTTCTTTCCAATGTGCCATTTGCAGTATAAAACTCCAATCGCTGGAGGCTTTGAAGGTTCATTCACAGACTCACAGGGGGGATTCCACAGTATACAGATCAAAGGAGATCTATCGTTTGTTCGAATGTGATAGTTGCAAAAAAGTATTCACGACAAAAAGTGTACTAGAAAGGCACATATTCACACATACTCACGAACGCCAATTCGGTTGTAAGGTTTGCGGAAAACGGTTTAAACAGGCTGGCCATGTGAAGTCTCATATGCTTGTACACACCGGAGAACGTAAATTTGAGTGTAAAGTTTGTTCGAAAAGATTTAGTCTATCAAACTCTCTTAAGAAGCATATGTATATTCATAATGGGGAAAAACCATACCAGTGCGATGTGTGTGGAGCACGATTTCTCGAGAAACGAAATCTCACTGGACACTTGATGACCCATACAAACGAACGTCCATTTTCTTGTAAAATCTGCGGAAAAAGGTACACGCTTGCAGATACGCTTAGACGTCATATTAGTGCTGCTCACGAAGACGGTAGAACTTATCAGTGCGAAATTTGTGCCAAAATGTTCAAACAGCTAGCACATTTGTACGTGCACAAAAAAGTGCATACGGATGAAAGGCCTTATCAATGCCATTTGTGCGATAAGAATTTCAAACACAAGAATGTTTTGAAATCTCATCTAGCCATACACGCCAATTTGCGTCCCTTTGAATGCGAGGTTTGCAAAGCCACTTTTGTGAGAAAGACCAACCTTCAAACTCATATTGCTTCTGCACATATGAACGAACGACCTTACGTTTGCACGATTTGCAATAAACGGTTCAAGCAAGTAAGTCACTTGAATGGTCATGTCATCGTGCATAGCAATTCGATGCCTTATCAATGCGATTTTTGTGATCGACGTTGTAATCGATTGGATAACTTGAAAAAACATATGCGTTTGCATACTAAAactaaagaataa
Protein Sequence
MSADELIQNATYFSSGKLNPRCQVDIIDMRGEQALDYKFILAYEDQTSKFIILRPLRTRDPKEVATELLDVFTIVGAPRVVQSGNGRVFASQIVQELRRLWVDLIIVHGEVESVFTTSKRDFLKSVKLWLEKNPSKLWSEALKFVQFIENTTFCCGSAKTPHEMLFKTNEPIITFSTSGHILTKIWTEEDWDQLITSHSKNGENINFTSNSKQQDSNLNRNKITSELRFQFEETNSDEDNRNDRQDAEQLKKNRRLITSCEISSGFKFVNVKSGNSIHVEHAEDSQSGSEGHSASESKSKPTEKYQLKCKICQKRYMKLGHLKNHLKSHTKANGFECTICCKKFRLAKVHDQHMRRFHNSNTALKISENVCLKESLKGDLEDNSKSTRLSEEKCDIEPPENSRIRKETNHKTQKRLQRSGNNRLSKELRSTKFNNTSLLECSYCQQKFDFPSVLKRHVRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHTDYRSFQCAICSIKLQSLEALKVHSQTHRGDSTVYRSKEIYRLFECDSCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFECKVCSKRFSLSNSLKKHMYIHNGEKPYQCDVCGARFLEKRNLTGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLYVHKKVHTDERPYQCHLCDKNFKHKNVLKSHLAIHANLRPFECEVCKATFVRKTNLQTHIASAHMNERPYVCTICNKRFKQVSHLNGHVIVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKTKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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