Apag002760.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- -
- Assembly
- GCA_963969455.1
- Location
- OZ018308.1:22419766-22424189[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 5.5e-06 0.00041 20.6 1.6 2 23 65 86 64 86 0.96 2 27 0.00059 0.045 14.2 6.0 1 23 88 111 88 111 0.97 3 27 0.0008 0.06 13.8 1.4 1 23 116 139 116 139 0.95 4 27 0.00061 0.046 14.2 2.3 1 23 145 168 145 168 0.96 5 27 0.0007 0.053 14.0 1.9 2 23 175 197 174 197 0.96 6 27 0.021 1.6 9.3 0.4 1 23 202 224 202 224 0.96 7 27 0.00034 0.026 15.0 0.2 2 23 231 251 230 251 0.96 8 27 9.4e-06 0.0007 19.9 0.1 1 23 257 279 257 279 0.97 9 27 0.0088 0.66 10.5 2.2 1 23 285 307 285 307 0.97 10 27 0.00016 0.012 16.0 2.6 1 23 410 432 410 432 0.99 11 27 0.15 11 6.6 0.4 2 23 435 457 435 457 0.95 12 27 0.12 8.8 7.0 3.5 1 23 462 485 462 485 0.94 13 27 8.1e-05 0.0061 16.9 1.4 1 23 491 514 491 514 0.94 14 27 0.0074 0.56 10.8 1.9 2 23 521 543 520 543 0.95 15 27 0.00084 0.063 13.7 0.3 1 23 548 570 548 570 0.96 16 27 2e-05 0.0015 18.9 0.5 2 23 577 598 576 598 0.97 17 27 0.00011 0.0083 16.5 2.1 1 23 604 626 604 626 0.96 18 27 9e-08 6.8e-06 26.2 0.5 1 23 632 654 632 654 0.98 19 27 0.071 5.3 7.7 3.4 1 23 782 805 782 805 0.95 20 27 0.035 2.6 8.6 0.8 1 23 807 830 807 830 0.95 21 27 0.73 55 4.5 0.3 1 23 840 863 840 863 0.95 22 27 0.00021 0.016 15.7 0.4 1 23 869 892 869 892 0.96 23 27 0.00017 0.013 15.9 2.0 2 23 899 921 898 921 0.94 24 27 1.9e-05 0.0014 18.9 0.3 1 23 926 948 926 948 0.98 25 27 1.2e-06 9e-05 22.7 0.5 3 23 954 974 952 974 0.97 26 27 1.3e-06 0.0001 22.6 0.1 1 23 980 1002 980 1002 0.98 27 27 3.8e-05 0.0028 18.0 1.4 1 23 1008 1030 1008 1030 0.98
Sequence Information
- Coding Sequence
- ATGTCTGTAGACCCATCGACAAGCTGTTATCCTGGACCTGCATGCAATACTATGTCTATCATTGTTTTATCATGTAAGAGCATCGCACCGGACCCACTGTACCTTCCCAACTACTCGTTTGCCAAAAATAATGGTCCTGCCATATCGGAAGGGGTCGATTCAGCAAAGACTCGACCGAAGAGAAAGACACTGGAGTGTGATTCGTGCAAGAAACAATTCACAAAGAAAAGTAATCTGATCGAGCACATGAGACAGCACGCTCACAAGTGTCCGCACTGTCCGAAGACTTGCAGCTCCCAGCGATATCTCGATGCCCACGTACAGAAAACCCACAAGCTTCAGTTCTACAAATGCAACGTTTGCGATTACAAGAGCAACAACAAAGGAACCCTCAAGTCCCACTTCATCCGGATCCACACGAACAACTTCAACTTCTCCTGCAACGCCTGCGGCAAACAGTTCAAGCTGCGTAATGCTCTGAATCACCATATCAAGCAAAACCACAGTGGCAATCCACCGATAGTCTGCGACGTCTGTGGCCACTTCAGTAAAAATCTACATGCTCTCAAAGCCCACATGCGATATCGCCATTACAAACCCCAATTCGAGTGTAAAATCTGCAAACGAGGAATGACCACCCAACTCAATCTGGACCAACATCTGTCCTGGCACGAGAACAAAGAAAAGGTTGTCTGTCCAACCTGTGGCAAACGATTCCGCGGTCGAGATCTGGATTCTCACATGAGAGTGCACACCGGTGCTAAACCATTCCCATGTCCAGTTTGCGGAAAGGCTTTCAGGCGTCAAACTGCCCAGGAACAACATCTTTTGATACACACCGGCAAGAGATTGTACTGTTGCGACGTTTGTGGTCAAGCCTTCGCTCAGAAGCCTGGTTTGATTTGTCATCGCAAGAGACATCCCGGTCCTCTGCCACCGCTACCAGTTGTGTCCATAAAAAACATAGTCACGAACTTTACTAAAGAATACACCGAACGAAACGTGAACTGCAATTCGAGCTCTCCTGATCCGCTGCGATTGCCCACAGAGAAGTTCCCATTGAAGATAGGAAGCACAGCTGGAATGCGGACTGTGCTTGAAAATGTGAATGCAGCGGATGGGGAGGCTGGTAAAGAGACTGTGAAACTAATAGGCATCGCtagaaaatttcaagttaCTCCAAACTCCCAGAATCTGGTATCGAAGAGGTACGATAAGGCTAATTGGTACGAATGTGATTTGTGCCagaagaaatatttcaagaaGAGCACTCTCGTCTCTCACATCAAGAAGCACGTTCGCCAATGTACGCAGTGCGTGGGGATGTACGTGCTGAAGAGGGATTTGAAATCCCACATGCAACAGGCTCACGCTCCTCGAACATACAACTGCAGCTTATGCGACTACAAGAGTAGTAAGAAACGAACCCTGAACGACCATTTCACCAGGAAACACACGGACAACTATCAATTCACTTGCAAAATCTGTGCTAAGTCATTCAAATTACAGAACAACTTGCGACAGCACGTTAGTCAAATGCACAGCGAGAGGCCGCCGCTCGTATGTGACTTCTGTGGCCACGTTAGCAAGAATCTTAGAGCTCTGAAGTCGCACATCAAACATATCCATGAAAAACCGGACTACGTCTGCAAGATATGCAAGAGAAGACTGGCCTCTAAGAAAGGACTAGAGCAGCACCTAGACTGGCATGAAACCAAGGAACGAGTTGTTTGTGAGCAGTGTGGAAAGATGTTCCACATCAATTACGATCTGGAAATTCACATGAGGTCGCACACGGGAGTCAGACCACATGCTTGCACCATTTGTCTGCGATCCTTCGCTCGACGTAACACCTTGAGGCAACATCTTCTTACGCACACCGGAAAACGACCTTACGTCTGTGATATTTGTGGTAAATCGTTCACCCAGAAGGCAGGACTCACCAGCCATAGGAAATCGCATCCAGGCCTGCACCCACCTCTTCCTAACGTCTACATAGACAGTATATTGAAAGACTTGGATCCTAAGATAACGACGAACGAGGCAACATGCCTCGATACGAAAGCCTCGCCAGATCCTCTGTTAGTAGGACAAGGGAAAAATCGTAGGAGAGCGAAGTTGTTCGCATGTCACAAGAAATTAAGGCCAACATTGATACTACCAAAAGGAACGTCGTCGAACCAGGTCGTTCTGATGCCACAAACTTATCTGGTACTCGATGAGCGAAGGTTGGATGATCGTATTGCTGTTTCTGAATCAGGTGTCTCGAAAGAGAAGAACGATGCCTCAAATGGTACCGATGGGCATGAAATCTCAAAGAAAAAGATTTCCACCACCGATCATTATTTCTGTTGCTTGTGCAACGTCAACTTCCCAAAGAGATCGCTCTTTGCGAAGCATGTGAAGAATACTCATGCACACCGCTGCGACAGATGCGTCGAGCCGTTCGAGAAGCGAGAAGATTTGGAGGATCATGCGAAGAACAAACATAAGGCGATGAACCAGGTGAAACAGAGCTACCCTTGCAACGCGTGCAGTTACGTGAGTAAGAACAAACGAATTTTGGAAGCTCATTACATAAGGAAACACACAGATTCGTACAATTATTCCTGCGAAGTGTGTGGAAAGGGGTACAAAATCAAGAACGATCTGAGGACGCACGTGATCAAGTATCACAGCGGCAATCCACCCGTCGTTTGTGACGTTTGTGGTAGATCGTGCGTCGACAAGCATACTCTGAAGGTCCACCAGAAGTTCGCACATTACAAGCCTCAGTTCAAGTGTTCCATATGCCCGAAACGATTGGTATCGCAGGAGAACCTTGACCAGCACATGCAGTGGCACAGCGAAAAGGTTATCTGCGAAGAGTGTGGCAAAGCTTTCTCAGAGAAGTGTTCGCTAGCTGTTCACATGAGGACACACACAGGAGACAAGCCTTATCCTTGTCCGGTATGTGGCAAGTCATTTGCCAGGTCCGGTGCTCAACGACAACACATCCTAACTCACACCGGACAACGTCCTTACATTTGTGACATCTGTGGGAAGTCCTTCACCCAAAAACCAGGACTGATTTGTCACAGGAAAACGCACCCAGGACCGCTGCCTCCTCTGGCACCGCTGTACATCGAGAACATCCTGAACAAGTTCAAAGCTGAATTTGAGAACAACATTGTCAATACTGTAAAAGATAAAGTATAA
- Protein Sequence
- MSVDPSTSCYPGPACNTMSIIVLSCKSIAPDPLYLPNYSFAKNNGPAISEGVDSAKTRPKRKTLECDSCKKQFTKKSNLIEHMRQHAHKCPHCPKTCSSQRYLDAHVQKTHKLQFYKCNVCDYKSNNKGTLKSHFIRIHTNNFNFSCNACGKQFKLRNALNHHIKQNHSGNPPIVCDVCGHFSKNLHALKAHMRYRHYKPQFECKICKRGMTTQLNLDQHLSWHENKEKVVCPTCGKRFRGRDLDSHMRVHTGAKPFPCPVCGKAFRRQTAQEQHLLIHTGKRLYCCDVCGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTNFTKEYTERNVNCNSSSPDPLRLPTEKFPLKIGSTAGMRTVLENVNAADGEAGKETVKLIGIARKFQVTPNSQNLVSKRYDKANWYECDLCQKKYFKKSTLVSHIKKHVRQCTQCVGMYVLKRDLKSHMQQAHAPRTYNCSLCDYKSSKKRTLNDHFTRKHTDNYQFTCKICAKSFKLQNNLRQHVSQMHSERPPLVCDFCGHVSKNLRALKSHIKHIHEKPDYVCKICKRRLASKKGLEQHLDWHETKERVVCEQCGKMFHINYDLEIHMRSHTGVRPHACTICLRSFARRNTLRQHLLTHTGKRPYVCDICGKSFTQKAGLTSHRKSHPGLHPPLPNVYIDSILKDLDPKITTNEATCLDTKASPDPLLVGQGKNRRRAKLFACHKKLRPTLILPKGTSSNQVVLMPQTYLVLDERRLDDRIAVSESGVSKEKNDASNGTDGHEISKKKISTTDHYFCCLCNVNFPKRSLFAKHVKNTHAHRCDRCVEPFEKREDLEDHAKNKHKAMNQVKQSYPCNACSYVSKNKRILEAHYIRKHTDSYNYSCEVCGKGYKIKNDLRTHVIKYHSGNPPVVCDVCGRSCVDKHTLKVHQKFAHYKPQFKCSICPKRLVSQENLDQHMQWHSEKVICEECGKAFSEKCSLAVHMRTHTGDKPYPCPVCGKSFARSGAQRQHILTHTGQRPYICDICGKSFTQKPGLICHRKTHPGPLPPLAPLYIENILNKFKAEFENNIVNTVKDKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -