Apag009268.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- -
- Assembly
- GCA_963969455.1
- Location
- OZ018311.1:17509815-17510153[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-13 3.5e-10 39.4 0.0 4 41 14 51 11 55 0.93 2 2 2.7 2.2e+03 -1.6 0.0 22 31 101 110 100 110 0.76
Sequence Information
- Coding Sequence
- ATGaccgagaaaagaaaatatcggTTGTGGACCAAAAATGATATGAGACGGGCAATTGCGGCATATAGAAACGGAGACTGCGGGCTCAATGAGGCGTGTACAAAACATGGCATCCCAAAACCTACGTTAAAGCGTCAtgttgacgagaaaaatgcatTTGCAAACAACGACGTCAAGTTCGCTGGCCGACCATCGATTTTCTCCAATGATATCGAGGAGGAACTAGAAAACCAAATTTTACGTTCGCATACTCAGATGTTTGGTTTGACCATCACGGACGTCAGAAAATTGGCGTTTCAGCTTGCCGGAAGAAATGGCATACCTCATACGTTCAACTAG
- Protein Sequence
- MTEKRKYRLWTKNDMRRAIAAYRNGDCGLNEACTKHGIPKPTLKRHVDEKNAFANNDVKFAGRPSIFSNDIEEELENQILRSHTQMFGLTITDVRKLAFQLAGRNGIPHTFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -