Apag014001.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- bab1
- Assembly
- GCA_963969455.1
- Location
- OZ018314.1:9265650-9268797[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.8e-15 5.5e-12 45.2 0.1 3 45 343 385 341 385 0.92
Sequence Information
- Coding Sequence
- atggGGACTGCATCTCAACAGTACTGCCTTCGCTGGAACAATCACCGATCAAATTTACTGACTGTGTTCGACGAATTATTACAAAACGAAGCATTTACCGACGTCACATTAGCTGTAGATGGCGGAGCATCTGTCAAATGTCACAAAATGGTATTGGCGGCGTGCTCCTCGTACTTTCAGACGTTATTCATCGATCTACCCTGTAAGCATCCAGTAGTTGTGCTCAAGGATGTGAAGTACATCGAAATTAAAGCAATTCTAGAATATATGTATCGTGGTGAAGTGAACGTGGCGCAAGAACAGCTCGGAGGTTTGTTAAAAGTGGCAGAAGCTTTGAAGGTGAAGGGGCTCGTTGAAGAGAATGGCTCCCAGAGTCGAAGAGAGGAGGGTGAAACAGTTCAGTCACCACCTGCTATCACGACCAGTACTACGAGCAGTGCAGCTCACAGTAGTGGACAAATTTCACCGCCTCATTCCACGGGAGCACCATACAATCTATATGGCAAGTCGCCGGTGGAACGAGGTCAGGGTCGGTTGTCTCTACCTATGTGGGCGTTATCTGGATTACCATTACCTCAGCACCCAGCATCCGGACATCCACCGCCACCTCATGCTCAACATACCTCTATGCTCGGTGGCTCCTATGACAATGGATCAGATTCGTCACCTTTAAAACGTAAAAAACTGTCAAACCTGCTAATGACTCGTGATACCCCAATATTACGAACTGTACTTGGACAAGGTCACGTAGACAGTTCTCAAGGAGGAGTGCCATTGCTACATACAGAAACTCATGAAAGTCACCCTCGCACGCACAGCAACGGTTCGGCCAATGAACTAGATAGACGTAACAGCAATGATCTCTCGCACAATGAAACTGTGCACAGTCCATATACGGATATATCCATCATGGATGATGACGAGAAGCAACCATCACCCCAATCATATGTAGGAGACACAAATCGAGGAATAGTCAATTATGTTCCCCAGAAACCAGAATGGAAACGCTACAAACAATATACGAGGAACGACATTATGTCAGCAATTGAAGCTGTGAGATCAGGAATGAGCGCACTTCAGGCAGCACGCAAGTACGGTGTACCCTCTCGCACCCTGTACGATAAAGTGAAGAAGTTGGGCATCACAACTTCCAGACCATTTAAACGTGGTTCGAACGGGAGTGGCGCTTGTTTTCCTTATGGCATCGGTGGTAATGCGAATGGCAGCATTTACAGCGGTGGATTATCGGAGAGCGAGAATGAAAATAGTAGTGCGGGGATTGGTGGAAACCCAGCATCAATATTGGATCCGAATTTCATAGAGGGACGAGAGCCAGTGGACAGGGAAACTATGATGGAAATGACACGTTGTAGTCCAAGTCCTGCCATTCATACAATGtctcaacaacaacagcaacaacaacagcaacaacaacaacaacaacaacagcagcctACTACAGAAGATCAAGTGGAGGATTTATCGGTCACACGTAAGCCTGACATTCGAGTTATAGTGCCACCGACAATAGTCAAAGAGGAAGAACAGGACACTTCGAACAGCTCCAATCGTAACTAA
- Protein Sequence
- MGTASQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLAVDGGASVKCHKMVLAACSSYFQTLFIDLPCKHPVVVLKDVKYIEIKAILEYMYRGEVNVAQEQLGGLLKVAEALKVKGLVEENGSQSRREEGETVQSPPAITTSTTSSAAHSSGQISPPHSTGAPYNLYGKSPVERGQGRLSLPMWALSGLPLPQHPASGHPPPPHAQHTSMLGGSYDNGSDSSPLKRKKLSNLLMTRDTPILRTVLGQGHVDSSQGGVPLLHTETHESHPRTHSNGSANELDRRNSNDLSHNETVHSPYTDISIMDDDEKQPSPQSYVGDTNRGIVNYVPQKPEWKRYKQYTRNDIMSAIEAVRSGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSGACFPYGIGGNANGSIYSGGLSESENENSSAGIGGNPASILDPNFIEGREPVDRETMMEMTRCSPSPAIHTMSQQQQQQQQQQQQQQQQQPTTEDQVEDLSVTRKPDIRVIVPPTIVKEEEQDTSNSSNRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01538079;
- 90% Identity
- iTF_00159222;
- 80% Identity
- iTF_00159222;