Apag005939.1
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- ttk
- Assembly
- GCA_963969455.1
- Location
- OZ018310.1:1183888-1186239[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-06 0.0016 18.1 0.0 5 37 200 232 196 236 0.84 2 4 5.4e-12 4.3e-09 35.9 0.0 5 39 250 283 246 288 0.88 3 4 0.97 7.8e+02 -0.1 0.0 25 33 323 331 306 335 0.85 4 4 4.9e-10 3.9e-07 29.6 0.1 4 40 363 399 360 404 0.90
Sequence Information
- Coding Sequence
- ATGTCCGAGGTTGATAGTCAACCTCAAATTTCTCAAAGTTATTGTTTCAAATGGAGCGACTACCAGAATCACTTGTCATGCGTGATTCGTCAATTATTGGACGAGAATTGTATGGTGGACGTCACAATTTCAGCCGATGGCGAAAAGATTCACGCACATCGTATCGTATTATGTGCTTGTAGCTCGTTGTTTCAAgatATTCTCAATCAATTTACCGATGATTATCCAACAATCATATTGAGCGACATATCAGCTCAGGAAGTGCGATCCATCATCGAATTTATATACAACGGTGAAGTCAGCATCCCCGTGGAAAATATCAGTAGCCTTCTAGATGCGGCTCATTGGTTGAAAATTCGTGGTCTCATGGAGATCGATGGGTTGGATGAGAGCGATGGTACGACGTGTGCTGAGGATTTCAATGAGGAGAATGTCGAGTCACTAAACGAATTAAATGAACAAGAAAAACAGGAAATCGATAGGTTGGAACAGGAATATGAACATGTGACGGAGTCAGTGGAAGAAACTGTCGCAACGTTCAATCGAAAACGGAAGCGAAGACGAGATACTGGCAAAAAGGAATACAGCGAAGCTATGTTGATGTCAGCAATAAACGATCTTCGCAGTGGACACACGCTAATTGAAGCTTCGACTAATCATGGGATTCCCCGCTCTACGTTGTATATGCGTGCCAAAGCACTCGGATTACTCCTCAATGCTTCCAGAAACGAGTATTCCAGTGAATGTATAAAAGCAGCGATAAATGCTGTTATAAATGGGTCAAGTTTGCAACAAGCATCAGAAATGTACAACATTCCAAAGACTGTATTATGGCGACGAATTCAGAAGGAAGGCTATCAAATTTTAGGTCACCGTACAGAGCTAAGGAAAACGTACGATGCCGATAGAAGAGAAGCTGCGGTTAAAGCGttggaacgaggagaaaatttgacaaaagtTTCATTAGAATTTCGAATACCAAAAACAACGTTGTTCAGAGACAAGGCGAAACTAGTGGATGAAGGGAAGCTTCCGCTTTCCTACTGGAAAAAACGCAAGCCAGAAAATGAGGATTTGAAAAAGTCACGTTTAGAACAAGCAGTAGCTGCTTGTAAGGGCGGAAGAATGTCTCAAGCCGCGGCTTCGATGACATATCATATTCCAAAAACAACGATATGGAGAAGACTACAGcaggaagggaaaaaatcaactcaACCACCTGAAAACGTGTCGCAGGATAAATCTGAATCTGCCGATACTGCTGATCAAAAACAAGACGACGCCGAGTTTACGTTTTGCGAGGTGAGTTCGGAGATACCGATAACGTACATCGATGAGAATAGCATACCGGAGGACTCGGTGATAATTTTAACGACGGACGATGTAGATGGAATAAATTTAGAGGAAGGAAGACAAATAATTGTGAATTCGgATTCCACGCAAGAATACGTGCCATGTACGTTAAGCATAGAAGATCGTACGGCGTACgagcaagaagaagaaagttAG
- Protein Sequence
- MSEVDSQPQISQSYCFKWSDYQNHLSCVIRQLLDENCMVDVTISADGEKIHAHRIVLCACSSLFQDILNQFTDDYPTIILSDISAQEVRSIIEFIYNGEVSIPVENISSLLDAAHWLKIRGLMEIDGLDESDGTTCAEDFNEENVESLNELNEQEKQEIDRLEQEYEHVTESVEETVATFNRKRKRRRDTGKKEYSEAMLMSAINDLRSGHTLIEASTNHGIPRSTLYMRAKALGLLLNASRNEYSSECIKAAINAVINGSSLQQASEMYNIPKTVLWRRIQKEGYQILGHRTELRKTYDADRREAAVKALERGENLTKVSLEFRIPKTTLFRDKAKLVDEGKLPLSYWKKRKPENEDLKKSRLEQAVAACKGGRMSQAAASMTYHIPKTTIWRRLQQEGKKSTQPPENVSQDKSESADTADQKQDDAEFTFCEVSSEIPITYIDENSIPEDSVIILTTDDVDGINLEEGRQIIVNSDSTQEYVPCTLSIEDRTAYEQEEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00159230;
- 90% Identity
- iTF_00159230;
- 80% Identity
- iTF_00159230;