Agra015004.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- nfxl1
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000042.1:2352711-2363720[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2 2.8e+04 -7.9 5.6 15 19 188 192 187 192 0.81 2 16 0.41 5.7e+03 -1.9 0.6 4 10 223 229 223 229 0.93 3 16 6.3e-08 0.00087 19.9 15.2 1 19 237 254 237 254 0.99 4 16 2 2.8e+04 -4.5 2.0 5 10 279 284 273 284 0.73 5 16 1.2e-07 0.0017 19.0 15.4 1 19 290 308 290 308 0.93 6 16 2.7e-06 0.037 14.6 8.8 1 19 343 361 343 361 0.96 7 16 2.3e-07 0.0031 18.1 14.9 1 18 396 413 396 414 0.97 8 16 0.33 4.6e+03 -1.6 0.2 8 12 430 434 429 435 0.76 9 16 1.3e-07 0.0018 18.9 16.1 1 18 448 465 448 466 0.98 10 16 3.9e-06 0.054 14.1 15.3 3 19 477 493 469 493 0.86 11 16 0.00048 6.7 7.5 6.6 9 19 541 551 540 551 0.92 12 16 0.0011 15 6.3 5.5 1 11 560 569 560 570 0.96 13 16 1 1.5e+04 -3.2 2.6 14 19 598 603 598 603 0.88 14 16 0.002 27 5.5 6.8 1 12 639 650 633 650 0.91 15 16 0.12 1.7e+03 -0.2 18.6 3 19 679 695 678 695 0.93 16 16 2.6e-06 0.036 14.7 9.8 1 16 740 754 740 758 0.89
Sequence Information
- Coding Sequence
- ATGGGTGAACGTTGGAGAAATAACCGCAACTCGGACAATGCATGGTTCAAAGGCGGCACGGGACGAGGATCTGGAAGACCTCCTGATTCACAAATCAAAATGAATTCAACTAAACATGAAGTGCCGACTAAGATCAAGACAAATACATCTAAACAGGAGGTGCCGACCAAGTTCAAGGAAGCCAGCGCAAATATGCAAGCGTCAATTCAAAAGCACGTTTCCAATTATGAGTCGTCTTCCGAGGAGGAGGATTTGGAAGAAGCTCAGATTTTAGATTCTGTTACCGGTAATTATATTGGACAAGGCAACATGAGTTTTGGAAAAACTAGAGAATTTCTTGAGCAATCATTCCAATCGGGTGCTGCCATTTGTCTCGTTTGTATTGCATCCGTGAAAAGAGTTCAACCTaTATGGAGTTGCGGTACCTGTTTTACTGCTTTTCATCTGCCATGTATTCAAAGATGGGCTTCGAGTACTATTTACCAACAGACCGAATCTTCCGATCCCACCGTCGGAGACTTACCTGTAAGGGTGAAGTCTTTCAAGAAGATCGAATGGTGCTGTCCAAAGTGTCGTTGCTCTTATAAACAGGAGAACGTTCCAAACAAATACGAATGTTTCTGTGGAAAGGTACGCGACCCGGAATTTCAACCGTGGCTCATTCCTCACTCTTGCGGCGCCACTTGCGATAAAGCTCTAAAACCGGATTGCGGACACAGATGTCTTCTCTTATGCCATCCAGGGTCTTGTCCGCCTTGTCCCAAGATGATCAACATGCTATGTAACTGCAAACAAAGCGATCCGAAACCTGTGCGATGCAGCGTTCACAACTGGTCGTGCACCAAAACGTGCAATAAGATATTAACGTGCAATTTGCATAAGTGCGAAGAGAAGTGTCACCCTGGCGAATGCGAACCGTGTCCAAAAACATCTCTACAAACATGTCAATGTAAAAAATTCACTGTGCAAAGACCGTGTGCCGACTCAGAATGGCGATGCGATACCGTGTGTGGTAAACCGTTCGCTTGCGGTTTTCACAAATGCGAAGAGATATGTCACGTATCGGTGTGTGGCGATTGCCCGTTCACGGGTCTACAAAAGTGTCCTTGCGGAGCCGTTCACAAGGAAGTAACTTGTCCCAATGAGGTCACATCGTGCGGTGGCACGTGTGATAAATTGCTACTATGTGGCGAACACATGTGTCCTAATAAATGTCACAAAGGACAGTGTCCACAGTGCCTCAAATTGGTTGACAAAACTTGCCGGTGCAGACTACACGTAAAGCAACTGCCATGTCATAAACAATATTTATGCGAAACTAAGTGCAAAATAATGAAGGAATGTGGACGCCATGCTTGCAATAAAAAGTGCTGCGATGGGGAATGTCCACCGTGCGACAAAGTATGTGGCAAGACCCTGCAATGCAAAAAGCACAAATGCCCGAATACGTGTCACACCGGTCTGTGCTACCCGTGTCCTCTGACTGCCAAAGTGACATGCCGATGTAACGGAACGTATTACTCCGTCCCCTGTGGAGTCGAAAGGAACACAAAACCTCCAAAGTGTATGCAGAATTGCAAacTTCCGTTCACATGTGATCACATTAAAGAAAATTTGCACAAGTGTCATTTTGGTGCTTGTCCTCCTTGTAAGCAAAAATGCGGTAAAACTTTGCCGTGTGGCCACAAATGTTCCATTTTGTGTCACAATGCAGTTCCAGTTTTGCTGCCACTTCCCAAACCAGCTGGCCCGTGGGAAGTTCAAGCACCTAAGaTTGAAATACGAACTTTACCATGTCTGCCGTGCAAAGTTCCAGTTACTAGACCGTGTCTGGGCGGTCATGAAAATGGCGAATTCCCATGTAGCGAAGCTCGTGTAACATCTTGCGGAAGACAGTGCGGTCGTCCATTGAAATGTACGAATCATACGTGTAGCCGAGACTGTCATTCCGTCCAACCATCAGCCAACGACGAGGTTTTTACCGATTGTGAAAATTGTTCACTCCTATGCAGATTTTCAAGGCCCGAAGGATGCAAACATCCTTGCACGAAACCATGCCATCCACCACCTTGCGATAAGTGTCAACAATTTTTGAAGAAACAATGCCACTGCGGTCTCACCGAGCTCTATATAAGATGTTGTCTTTTGACAGACTCTGATGAAAGTGTCAAAAGCGAAACGCTCTCGTGCAAACAACAATGCAGTCGCATGtTGGGATGTGGACATAGATGCTCGTTTATTTGCCACTCTGGAGAATGTTCGAAGGACTGCTCAAAGAAAACACGGGTATTTTGCGCATGTAGAAGAATAAAGAAGGAAATGCCATGCGATGTGGTGAGACAAAATGAAGTAAACATTCCATGTGATGAAATTTGCAAAGAGAAGAAACTTCAGCAACTGAATGCCAAAAAGGAGGAAGAGGATAAAAAGAGACTGGAAGAAGATGAAAAGAATCAAAAGGAGCTCGAGGAATTTGAACGAAAGTTTGGCAAAAAGCGATCCAGAGGACACAGAACCAAAGATATTGCACAAAAAAATAACGTTTCATTCTGGGCAAAATACAAGTACATCGTAATGGCTTTTGCCGTCGTCGTCGTCTCTTCGATAATCGTATacgttaatatttaa
- Protein Sequence
- MGERWRNNRNSDNAWFKGGTGRGSGRPPDSQIKMNSTKHEVPTKIKTNTSKQEVPTKFKEASANMQASIQKHVSNYESSSEEEDLEEAQILDSVTGNYIGQGNMSFGKTREFLEQSFQSGAAICLVCIASVKRVQPIWSCGTCFTAFHLPCIQRWASSTIYQQTESSDPTVGDLPVRVKSFKKIEWCCPKCRCSYKQENVPNKYECFCGKVRDPEFQPWLIPHSCGATCDKALKPDCGHRCLLLCHPGSCPPCPKMINMLCNCKQSDPKPVRCSVHNWSCTKTCNKILTCNLHKCEEKCHPGECEPCPKTSLQTCQCKKFTVQRPCADSEWRCDTVCGKPFACGFHKCEEICHVSVCGDCPFTGLQKCPCGAVHKEVTCPNEVTSCGGTCDKLLLCGEHMCPNKCHKGQCPQCLKLVDKTCRCRLHVKQLPCHKQYLCETKCKIMKECGRHACNKKCCDGECPPCDKVCGKTLQCKKHKCPNTCHTGLCYPCPLTAKVTCRCNGTYYSVPCGVERNTKPPKCMQNCKLPFTCDHIKENLHKCHFGACPPCKQKCGKTLPCGHKCSILCHNAVPVLLPLPKPAGPWEVQAPKIEIRTLPCLPCKVPVTRPCLGGHENGEFPCSEARVTSCGRQCGRPLKCTNHTCSRDCHSVQPSANDEVFTDCENCSLLCRFSRPEGCKHPCTKPCHPPPCDKCQQFLKKQCHCGLTELYIRCCLLTDSDESVKSETLSCKQQCSRMLGCGHRCSFICHSGECSKDCSKKTRVFCACRRIKKEMPCDVVRQNEVNIPCDEICKEKKLQQLNAKKEEEDKKRLEEDEKNQKELEEFERKFGKKRSRGHRTKDIAQKNNVSFWAKYKYIVMAFAVVVVSSIIVYVNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -