Agra017138.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Arctopsyche grandis
Gene Symbol
-
Assembly
GCA_029955255.1
Location
JARCGT010000055.1:5295623-5308707[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.067 5.2 8.3 2.2 1 23 58 81 58 81 0.95
2 21 0.034 2.6 9.3 2.6 1 23 88 111 88 111 0.98
3 21 0.02 1.6 10.0 1.2 2 23 171 193 170 193 0.96
4 21 4.3 3.4e+02 2.6 3.3 1 23 199 221 199 221 0.96
5 21 0.0016 0.12 13.5 0.5 2 23 227 248 226 248 0.97
6 21 2.5 1.9e+02 3.4 1.8 2 20 534 552 533 554 0.87
7 21 0.34 26 6.1 2.5 2 22 575 595 574 595 0.95
8 21 0.048 3.7 8.8 0.7 2 23 861 882 860 882 0.97
9 21 0.049 3.8 8.8 1.1 2 23 969 990 968 990 0.97
10 21 0.12 9.6 7.5 0.2 1 20 998 1017 998 1020 0.95
11 21 0.015 1.2 10.4 2.3 1 23 1048 1070 1048 1070 0.96
12 21 0.0074 0.58 11.3 4.9 1 23 1077 1099 1077 1099 0.99
13 21 2.1 1.6e+02 3.6 4.1 1 23 1187 1209 1187 1209 0.95
14 21 0.0081 0.63 11.2 0.8 1 23 1279 1301 1279 1301 0.96
15 21 0.0011 0.088 13.9 1.3 1 23 1307 1329 1307 1329 0.98
16 21 0.082 6.4 8.1 1.3 1 23 1404 1426 1404 1426 0.95
17 21 0.0066 0.51 11.5 0.1 1 23 1432 1454 1432 1454 0.97
18 21 0.0066 0.51 11.5 2.6 1 23 1543 1565 1543 1565 0.97
19 21 5.7e-05 0.0044 18.0 1.2 1 23 1571 1593 1571 1593 0.99
20 21 0.0059 0.45 11.7 1.4 1 23 1672 1694 1672 1694 0.99
21 21 0.00099 0.077 14.1 1.4 1 23 1704 1726 1704 1726 0.98

Sequence Information

Coding Sequence
ATGGCGTCTCCGTCGATGGTGCAAAGGTCTGGCGACACCCTCATCGTTAGGAGTGTAGTGAGCGGTGATCCTGCCTATTCTGAGCCGGTCGATTCAGACTCGCCGTTGATAGACGATTATGTGGAAGAATCCGACAAAGTCGATCTGCCTcagtgtaaaataaaaagaaactaCGACTGCAGTGAGTGTAACTATTTTACTCAAAATCCAAGACATTTCTTGACCCACCTTCGCGATGTGCACGGAGAAAAAGTTAAGATTTACTATTGCCCTAATTGCCTGTACGCTTCGAGGCACTTTCAAAAACTATTGAGACACATGAAGATGGTCCATGGTGTTTACAAAGCAACCGACAGCGCAAATCCCCCAAAGAAAAAAACCAAAGAATTATCATCTAAAGAGGCGGCATTGAAGTCAGACGAACCGCAGCAGGAGGAGACCCAGAAGAAATCTGAAATCGTCAAATCAGAAGAAAAACCACCCAGTCGGAAGCAATCGAAAGTAGAATTGAAATGTTCCATGTGTGACTTCACGGCAACTAGCTTCACTCTGCTGACAAGGCACGAGCGGAAAGAGCATCTAAAAACCAAATATTTCCCTTGTTCCAAGTGTAACTATGCTACCCACATAAAGGCACGTTTTACGAAACACGTCAAGTACCACTCGATGCCGATGATCAAATGCGAGGTGTGCGATTTCCGCACCCCTTACAAGTGGAACCTCGATCGGCACATGAAGAATCATGGGGGTGCTGGAGCCTTCTGCTGCTCGGCGTGCAACTTCACTGCTGACATCAAGCAGAGTCTGACCGTGCACGAGATGAACCACCACGTGCCATCTGTGGGGGTCGGAAGTACAGGGAGTGGAGGAAGTGGGACGGGAGCTCCCACCCGTCGCCGGAATCGGGTTGGAGCCACGGATGCGGCGCCGCCCCCTGCTGCGCGCCCCCGACGCAGACGAGCCCGTGTGCGCCCCACGCCACAACCTCATCCGCAGGAGGACGTAAATGAGTTTAGTTTGACAATGCAAAGTGAAAATACCGATATCAGTGCCATagaaaacaattcaaataataatgtagaGTATAATGACAGCTGTTTCAAGATGAAGTTTGAAGATTCTAATTTTGATGGTTTCATGGATAGTCAAATGACAAATGAAACGGACAGTGTTTTAAAAATCGAATGGATGGGCAACACAATGCAAAAGGAAGAAATGTCGCTAAGAGTGAAAACAAAGAAAACTCCACGACCCATTCCCAATTTAATTCCATTGCACATGCAAAGCTCCAATCAACttagtaaaaatgtaaatatgaattCTACACCTTTAAATTTAAGTGTAATTTCAAAATCAATGGAAAATTCTGccaatgattttaaaattcttCCTTCGTCCGAAGTGTACAAAATGGATATTCAATGCAATGATGACAGCGTGGATCAGTCTCAGTTTGATTATCTGTCGACTAAAAGCGACGAGTCGTCACAACATTCCTTACCGAGAGTAGTGAAAACTATtactaaaaagaaaaattcgTCCATATTCGacaaattatataaagaaaaaatgatCGCTGCAGTTGAAAATGGAAACCTGTCGTGCAAAGACTGTGGACATGTTTCCAAAACTCTTTCTGAACATACTCATCATGAAAAACTTTGCTCATCGGTTGACACCAAGTTGAATCATGTCACCATCCCGTCTGGTTTACGATCTACGAGATGTCAAAATTGTCGACATAGGTGTAAATCAAGCGCAGATTTGGTTGTGCACTTACAAACGTGTTTATTGACAAATAAACTTTCCGATGCTTTAAAAACTGATACTTGCAAAACTGAAAAAGTAGATTTTACTACCAACAATCGAGTAATATCTGAAGAAGAAGCTTCCGCAGACGATCCACAAGTGCCACACCCAATGGAAAATGTGGTTTTTGTATGGAATCCCATAATGAACAATAACCTGTCACTCGCATCTGTTGATAATTTTGATGTAAATGTGGACAACAGCAAAGTATTGACATCAACGCCAAATATCAATCAGCCTGCACGGGAACAAGAAAACGCAAATACtggaaaaaaagtttttaaatgcCCTCATTGTACTTTTTGGGCGTCAACAGCATCTCGGTTTCACGTTCATATTGTGGGACATCTGAATAAAAAGCCATTCGAATGTTCTTTGTGCTCATATAAATCGAATTGGAGATGGGATATTACAAAACATATACGATTGAAATCGGTTCGAGATCCTGAGCATACCAAGGCAAAAGTTTTGATGACAGATGAAACTGGTAGAAGAAATTATAGCAAGTACAACAAATATTTAACTTTAATGCAAATTTCGGATCCCTCCGTAGATGTAGCTTCTGCATCGTTGCATTTGTTTAATAGGAAATATAGAGAAAACGTCGGGAACACATCAgccaattatgaaaatttttcaagCTTGCAATCGGAAATGCTGGAAAACTCGTCTGATAATCCTTCAGACTCCCATACGCAGGGTTCTTCTCAGCTTGAAGATTATAAAGTTGaagaaaatatagaaaataaaaaatctagGAAATCTATGTGGAAGTGCAAAAAGTGTGATTATAGGAATGCGAGCAAAGACGCCTTACTCATGCATGTACGAAAACATTCAAAATCAAGCACAACTCAACCTCAAGAAGAAGAGCCAGCTGAAGGGCCAGATACTTCAGAGGTGATCAGTGCTTCTGACACGTCAAGCATATCATATCGATGTGGTCATTGCAACCAGGTATCCAATTGGAAGCATGTAATTCAGCGCCACTGTCGACTAAAGCACAATGGAGATGTGAAAGTGGTTGTCGGCTCAAAAGTCATCACATCCAAGAATTCTAATTCAAATGGTGTGCAAAGTATTTCAACACATATAAAGTGTTCAAAATGTCCATTCACTACAACATCTAAATTGGCGTATGAAAATCATCTGAAGCAGCATTCGATCACATCAGAATCTACTTTCAAATGTTTCATATGTCCATACTATGTTAAAACTGAAGCTGAATTGATGCAACATTTACCACTGCACGGCATATCGGACCCTGAAAAGTACGGCGTCCAAGTCCTCACCTGCAAATCACCGATAGCAGAAAATATACCGATAAAAAGATACAAGTGTTCAGACTGTCCATACGAAAGTAACAGTAAATCTCAATTTACCTACCACGAACAGTTTCACAAAGCCAACGATGCTCCGTTTAAATGCGACGTTTGCAACTACCAAGTGTCGAAACGTCACTTACTCCATCAGCATATGAAAGTTCACGGTTTCATCCCACCACAAAAAGATGCCGCAGAAGTCGTCAACACGTCAGTATCAGACACTTCGTCTACATTAAACAATTCAAATCAAGATGCATCCGATTTGATTCAAATGTGGGTATCGTATTGCGGTGAATTTCAAAAGATGTTCAAATGCAGATCATGTCCTTATGTGAATTTAAGACGGAATAATATCTTCGATCATGAAAAGATGCATTGCATTGATTCACACATGCCAAGTTTAGATTCACAAATGCCAAACATGCACAAATGCTCAGAATGTAACTACACTTGTAATAACGTAGATGTTTATTTGTCACATTCCAAAGTCCACAAAGAAGACTATGTCAAAGTGTTTTGTCCTGTAAATCATCTTAAAGCCGACGATCAACAAATAttagaattaaaagaaattttaagtgaattaaatttatataaatataagctGGACCCGTTACATAGTACCTCTAAAGATGAAACCAATGATACAAATGAAAGCAAAAAAATATCTTTCGATAGTAATCTGCCCAATAAATTCATGTATTTTTGCTCAGATTGCCCAGCTAGATTTATTTTCGAAAAAGAATTGcaaatacattataaatttcattGCATACGTTTACCTTATCAATGCCAAATATGCTCATATACAGCACGTCAACTCTCACATTTGTTGgctcataaaaatgtacattttaagAATTATCAAGAAAGAACTGAAGCACTGCAAAACTACCACATTCCTCATCCTGAACATCCTCAGCCTAAAATAGTGGCAGTCGCTACTTTTGTAAACGAACCCGAACCAGTCTGGATAGTAGTCGCCGATGCgatcaaaaataaaactatcgagTACGAACCAGTAGAAGCAGTTACAAAAGAAAACGTCAGCACTTCAAAACAATCCACAAAGCAGCATATGTGCACTCAGTGTCCAGCAAAGTTTTTCAAAAGTGCAGCTCTCAATTACCATTTAACTCTTCACGGTGGACAGGGTAGCTTCAAATGTCGTCAGTGTGATTATGCCGTGAAGACTATAGGCAATCTTGCTAAGCATGAAGCTGTTCACGTAAATGTAACATGTGACGCACAAATGGAATACGAATCAAGTGAAGAAacgaattataaaaatatacctatatcTGGAACTGATTTATATCAGCATAAAACTAAAGCTGAAAAGAAGGCTTTATCTGAAAAACTCGTTACTAGACCAAATGATCATTTTCCACCAGTATTACAAGCAGATCCTCAGTTCGGGTTGTTGATGCACGGTAACCCAGAATTTATCTATCCCACGTACTTAAAAAATGGCAGACCAAAAGAAAAGCGTTATAAATGCCACAAATGCCCTTCTGCTTTTGAAAAGAGAGAACAGTATAAGGTCCACTTGTCGTTGCATGGATCTAAACAAagatacaaatgtgaaatttgcgaTTATTCCGttaaatattatgcaaattaTGTTCAACATATGCGCAAGCATCAAATGAATGCCGATGCCCAAGCAGCTCGTCAAGGTATCTCCAAACCGGAACCGTTGGAAGAATTCACTTTACAAAGCAAAAGCGACACAAAATTAGCCATAAAAAGTCTTCCCAAACAATCATACAAAGATAGATCAAAGTTATCAATAAGTGACCAACAAACATTGAAACTTTTACATAGAAGACGTTCAAGCGGTGCCAGTAACAAAGATATTCCCGAAGAACGTAAGGTGTACAGATGTACTTATTGTCCTTATACTAACCAGAGACGAGACGCTTTGGATAATCATATGAGACGTCATGCTTCTGTCTCTGGTATCAATGGTAACTTTACATGCCATTATTGTGATTACGCAGCTCCGCAGTCGCAATTTTTACGAGATCATATGAAAGTTCACTTCCATCAACCAAAGCACATAGCTCCCGATTACTTTTCTAATTTTGAAGGAATCGGATTGCAGAGTAGCTTTTACGCGGCGGGCCGAGTCGAGTCGAGTCAAGAGGAGGGAGACGAAGAGGTAGGGGGCGGGGGCGGGAGAACGGAGGGGGCGACAGCTTCAGTCGTGTTCGTTTGTCTGCGATCGCGACTGCCACTGCGAATGCGAATGTGA
Protein Sequence
MASPSMVQRSGDTLIVRSVVSGDPAYSEPVDSDSPLIDDYVEESDKVDLPQCKIKRNYDCSECNYFTQNPRHFLTHLRDVHGEKVKIYYCPNCLYASRHFQKLLRHMKMVHGVYKATDSANPPKKKTKELSSKEAALKSDEPQQEETQKKSEIVKSEEKPPSRKQSKVELKCSMCDFTATSFTLLTRHERKEHLKTKYFPCSKCNYATHIKARFTKHVKYHSMPMIKCEVCDFRTPYKWNLDRHMKNHGGAGAFCCSACNFTADIKQSLTVHEMNHHVPSVGVGSTGSGGSGTGAPTRRRNRVGATDAAPPPAARPRRRRARVRPTPQPHPQEDVNEFSLTMQSENTDISAIENNSNNNVEYNDSCFKMKFEDSNFDGFMDSQMTNETDSVLKIEWMGNTMQKEEMSLRVKTKKTPRPIPNLIPLHMQSSNQLSKNVNMNSTPLNLSVISKSMENSANDFKILPSSEVYKMDIQCNDDSVDQSQFDYLSTKSDESSQHSLPRVVKTITKKKNSSIFDKLYKEKMIAAVENGNLSCKDCGHVSKTLSEHTHHEKLCSSVDTKLNHVTIPSGLRSTRCQNCRHRCKSSADLVVHLQTCLLTNKLSDALKTDTCKTEKVDFTTNNRVISEEEASADDPQVPHPMENVVFVWNPIMNNNLSLASVDNFDVNVDNSKVLTSTPNINQPAREQENANTGKKVFKCPHCTFWASTASRFHVHIVGHLNKKPFECSLCSYKSNWRWDITKHIRLKSVRDPEHTKAKVLMTDETGRRNYSKYNKYLTLMQISDPSVDVASASLHLFNRKYRENVGNTSANYENFSSLQSEMLENSSDNPSDSHTQGSSQLEDYKVEENIENKKSRKSMWKCKKCDYRNASKDALLMHVRKHSKSSTTQPQEEEPAEGPDTSEVISASDTSSISYRCGHCNQVSNWKHVIQRHCRLKHNGDVKVVVGSKVITSKNSNSNGVQSISTHIKCSKCPFTTTSKLAYENHLKQHSITSESTFKCFICPYYVKTEAELMQHLPLHGISDPEKYGVQVLTCKSPIAENIPIKRYKCSDCPYESNSKSQFTYHEQFHKANDAPFKCDVCNYQVSKRHLLHQHMKVHGFIPPQKDAAEVVNTSVSDTSSTLNNSNQDASDLIQMWVSYCGEFQKMFKCRSCPYVNLRRNNIFDHEKMHCIDSHMPSLDSQMPNMHKCSECNYTCNNVDVYLSHSKVHKEDYVKVFCPVNHLKADDQQILELKEILSELNLYKYKLDPLHSTSKDETNDTNESKKISFDSNLPNKFMYFCSDCPARFIFEKELQIHYKFHCIRLPYQCQICSYTARQLSHLLAHKNVHFKNYQERTEALQNYHIPHPEHPQPKIVAVATFVNEPEPVWIVVADAIKNKTIEYEPVEAVTKENVSTSKQSTKQHMCTQCPAKFFKSAALNYHLTLHGGQGSFKCRQCDYAVKTIGNLAKHEAVHVNVTCDAQMEYESSEETNYKNIPISGTDLYQHKTKAEKKALSEKLVTRPNDHFPPVLQADPQFGLLMHGNPEFIYPTYLKNGRPKEKRYKCHKCPSAFEKREQYKVHLSLHGSKQRYKCEICDYSVKYYANYVQHMRKHQMNADAQAARQGISKPEPLEEFTLQSKSDTKLAIKSLPKQSYKDRSKLSISDQQTLKLLHRRRSSGASNKDIPEERKVYRCTYCPYTNQRRDALDNHMRRHASVSGINGNFTCHYCDYAAPQSQFLRDHMKVHFHQPKHIAPDYFSNFEGIGLQSSFYAAGRVESSQEEGDEEVGGGGGRTEGATASVVFVCLRSRLPLRMRM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-