Agra000478.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000003.1:4286536-4292820[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.5 5.8e+02 1.9 0.1 3 23 389 409 387 409 0.90 2 17 0.43 34 5.8 0.3 2 22 419 439 418 441 0.88 3 17 0.003 0.23 12.6 5.6 1 20 650 669 650 671 0.94 4 17 5.9 4.5e+02 2.2 1.5 2 23 684 705 683 705 0.92 5 17 1.5 1.2e+02 4.1 0.8 2 23 714 737 713 737 0.88 6 17 0.011 0.82 10.9 1.0 1 23 741 765 741 765 0.97 7 17 0.0029 0.23 12.6 1.4 1 23 770 792 770 792 0.96 8 17 0.047 3.6 8.8 4.3 1 23 798 820 798 820 0.98 9 17 2.5 1.9e+02 3.4 0.0 2 19 831 848 830 848 0.83 10 17 0.012 0.96 10.6 5.5 1 23 950 972 950 972 0.96 11 17 3.3 2.6e+02 3.0 2.6 3 23 1056 1077 1055 1077 0.95 12 17 0.016 1.2 10.3 0.2 1 23 1096 1119 1096 1119 0.96 13 17 4e-05 0.0031 18.5 0.1 2 23 1136 1157 1135 1157 0.96 14 17 0.0002 0.016 16.3 0.2 1 23 1179 1202 1179 1202 0.95 15 17 0.71 55 5.1 2.9 1 23 1208 1230 1208 1230 0.96 16 17 0.00012 0.0096 16.9 0.3 1 23 1236 1258 1236 1258 0.98 17 17 0.012 0.93 10.7 2.5 1 23 1264 1286 1264 1286 0.97
Sequence Information
- Coding Sequence
- ATGTCGTTGATAATCAACTTGTTGAAGGATGAGGAGGAGGTTCCCGTGGAAGTTTTTCCAGATGAAGATTTCACTGCTGTACTACAGAAAGCCAGtaTCTTGGTTGGCTACGAAATTGACATTAGTAGCCTGATAGGAGAAGATGAAGTTAGCATGACTGATAgcgtttatgaatattttatgaaacAGGAGTCCCTTTTGACTATGCAAGATCAATTGGAAAGTGATTCCAACGTTTTGGAATATTTAAATGATGATGTTGATACGCTAAATCAATATCCCGATCAAAATACAACAATTGTCGCAGGTGATGATGAAAAGGAAGAAGACTGTGagaatgttattaaaataattgagttATCGGAGAATGAAGATTATGATGAGCCAGAAATAAAACCGCTAATAAAATCTGAAGCCATGGACTATATTCCTACTCTGAATGAAGAAAATGCATTCCTTAACACTGTGAATCAGTTTGAAGAATATTTCAGCAATGAAAAAGTTCCAAATGTTAACAGAATAATTGAAACAATTGTCAAAAATAGGGTGACTTGCCATTTCTGTAACATAAGAGTTTCTAATATGAAAGATCCAAaacgaaattatatttttgatgaaaaaaatcaagtttatTTCAACAAGAATCTTATTGAAAATATCACTATGAATGCCAAACTCATATGCAGCAAATGTCTtggaaataatttcaaaaaattaggAAAATCGGTAGATAAAAATTTGGTCAAAGATGAATATATTGTTGTTACTGATGGACTCAAGTTGATATATAAGGCGTTACCAGATGAGGAGACTTTCAAAAATAGACGAAAATCTAAAATTGTTGTTAGGCAAGATCCCAATGACCAATTTATGGAAGACAGTActatttctaaaaataataccaTGACCAAGAAAAAAAGAGGTCGTAAAAAGATCGATGATACCTCCAATGATAACACAAATTTTGTTGTCCGAAGAAAACTTACAAAAGACATTACTGATTCTGACTTGGAACTGAATAAAAAATCATCAGTTATCAAAAGAAAATTAGAAATGGATGGTACTAtatctgaaatttttatttctgcGGATGGATCAAATGCAGATGAAGTGTGTTCTCCAAGTAAAAAGATGTCTAAAGTATCCTCAGAAAATGAACTGATTTGTCGGTCATGTGGTTTACAATTTGAAGATTTGGCGTCAGTTGTGGAACATGGACATGTCCATCAAGTTCacaacagaattaatggaattCCCTGTGGTCTTTGCTTGCGTAGTTTCAAAAGTTTCAGCATTCTCAAACGGCATGTTTTTGGTGAACATCAATTGAGTCAGAGTGATTCAACTAAATTAGCGCAAACCAAAGAGCAGTTGAAAAGAATTTTAGAAGGCGATTATGATGATAAAGAGAGTACGTTGATTGAAGTTAAACCTGAAATTGTTACCCGTTGCAGTAAAAAAGAAGAACAGTCTGAAGAGAATGAAGAGGAAGATTTAACAGATAGATTACATAAGTATCTATCTGGTGAAATGGATGCCGACACATTCTTTCAACAAGAATaCTATAAATCAGATCCAGACAGTCAATTATTACCCGATGAAGACGATGATGACCTGGAAGTTTGGATCGTTCAAGCAGAAAATCCTGATGAAGCGGAAGATGGAGAAAGTATTACAGATGATGCAAATGTGGAAGAGTTAACGATCACAGCTGAAGATGAACCTGAAGATGACGGTGATGAATTAGCATTTCTTAATGCCACCGATAATGTGACAACAGAAATTGttgaaaatatagaaaatattgaCACTAACATTGTTGAAGAATTCCAAGAAGTTGATTACTTTGAGGATCCTGAATACGAtcctgaaaataatgatgataacGAAAGTGTCAAATCTAAAGATGAAAAAAGACCCAAAAAACGATGGAGTACTCAGGCaaaacacaaatgtgaaatttgcaacaAAAGTTATACAACTCAATCGCGTCTTGAACAGCACAAGTGTCATCCATCTGGTAACTCTGAAGATAAAAAAGATGATTTAACATGTTCAATTTGTAAAGAGAACTTTTTATCGAAAGTCCGTTTACAATTCCATAGACAAACTCATAGAGAGGGCGGCTGGCAGCACATGAGTTGTGATCAATGTGGCCGGAGAGATTTTGCTTCGGAACATGAATTGTTCGACCACATATATTTCAGTCATAAGAAACCGTATACTTGTCCTTTCGATGGATGTATCAAAACGTTCAAGCtcaaaaaattattgaaaactCATGTAAGAGATCATGGATTAAAGAAATATGTTTGTAACATATGCAATCAACGTTTTCAAGTTCACCAAACGCTCAAAGAGCATATGGTACTGCATTTAAAGGTTAAACCTTTCCAATGTCATATTTGTCACAAGTATATGAGTAAAGCATCGAGATTACGTATGCATTTATTGGTTCACACCTCGCAACAAAATCCTGCTCACATTCTTGTGTGTAAAATATGTGACAGTGCTTTTAAAGATGTCACAGAAGCTGAGGCTCATTGTGAAAATAGCTATGATTGTGAACCAAAAGAAGATGACAAAGACGGCGTATATGATGAAGATATGTATGAGGAAATGGGAATCCAAATCCTGTCTCCGACTCGATACTACAATGACGACGAAGATGTGAAATCTAGCTGGAGAAAAACTGACGTTTTACCGAAAaaagaaaatattaattcaCTTGAAATAGACATAGAAGGGAATAATGAAGGACCTACACTATCAAATAAACACAGTCTTCTGATGCAACTTTCTGACGTAGCAAGAAAAACTGTCACTGCAGTTTGGATCGATAAAGTGTTTTGTTGCCAATATTGTGAAAAagTGTATTACACAAAGGAGGCTCTTCACCAACACAGATATATTCACAATGGGGTTCCCGAACCGTATCAGTGCCATCTGTGTGAAGCCAGATTCCTCACATACGCCAGATGCACTGCTCACAAGTCTACGCATGGTTATTTCAAAGAAGGTGGAGCGCCGTCGTTGAGAGACTTCCCTGTCGTCAAACACTATCTGTGTGATTTGTGTGACAAAAGTAATTTATTGTGGACCACCGTTAGTGTTCATTTTAGGCACCACCATAAGTACAACATTAACCGACGTTTGCCGCCACCGTGTAAAAATTGCTGCACTCAGTACAATACAAGTTGGGAGTTAGGTAAACATCGTCGGATTAAACACAGAAAAGAAGTTCACGCAGCTGCCAAGGCTCCGATTAAAGTTGTTAACTATTCTTATAAGTGTATGCAGTGTGACCAGCAACTGCCAAATAGAGCTGCATTAACTTCGCATAGAAAGGCGTTACACGGAGATGATGATCCCGGAAGAAAGTCAAATAAAACTAcaGGTCTTTTAGTGTGTTCCGAGTGTGGGAAAACATACGCCACTAAACCAGCTCTACTCACCCACATCAAATGGCATACGGAACACGGAGTCGGTATTGAAGCCGCTAGGCGACGAAAGCGAGCATTTGGAAAAGGAAATCACATATGTTCAACTTGCGGGCTCGGATTTTATTCGGCAGCAAATCTCAGAGCACATATAGATCGTATTCACGAGAAGTCTTACAAGTATACTTGTGAAGAATGCGGCAAAGGTCACTTTACGCACGTAGAAATGGAAACACACAAACTGACGCACACCGGTGAAAGACCATTCAAATGTCCCGATTGTCCTAGAGCCTATGTCACTAAAGCTATACTTAACAAGCACTATAGgaacCACACGGGTGAGCGACCATACTCGTGTGATTTGTGTGGAGCTACATTTAAAACTGCTCATTCTCGCAATTATCACAAGATCAAGCATGAAAATGGAAAGCTTCCTGCTCCGTTGATTGTTTTGGAAGTAAAGGGTGGCAATTCAAAGGCTTTGCAAGCTGCTCTACACGATTCTTTCCAGGTCATGGGGGATAAGAAGGAAGGCAGAAGTGTAAAACAATATTCTGAAGACGGAGACAGTATAAAAGAAGAAATTGAAGAGTTCCATCAGGAAGTTAACGAAGAAGAGGTATTGGTGAGAACTTCGGAAATGGATGATTCTGATGATAATATCATTACGGTGCAAGAGGAATCACCGGATGGTGTGCATATTGTTTACAAGAGGATAGTTAGAGGCCTTGACGAAAATGGCTGTGAAAATGAATACACCATAGAATATGAAGAAGTTCAGTAg
- Protein Sequence
- MSLIINLLKDEEEVPVEVFPDEDFTAVLQKASILVGYEIDISSLIGEDEVSMTDSVYEYFMKQESLLTMQDQLESDSNVLEYLNDDVDTLNQYPDQNTTIVAGDDEKEEDCENVIKIIELSENEDYDEPEIKPLIKSEAMDYIPTLNEENAFLNTVNQFEEYFSNEKVPNVNRIIETIVKNRVTCHFCNIRVSNMKDPKRNYIFDEKNQVYFNKNLIENITMNAKLICSKCLGNNFKKLGKSVDKNLVKDEYIVVTDGLKLIYKALPDEETFKNRRKSKIVVRQDPNDQFMEDSTISKNNTMTKKKRGRKKIDDTSNDNTNFVVRRKLTKDITDSDLELNKKSSVIKRKLEMDGTISEIFISADGSNADEVCSPSKKMSKVSSENELICRSCGLQFEDLASVVEHGHVHQVHNRINGIPCGLCLRSFKSFSILKRHVFGEHQLSQSDSTKLAQTKEQLKRILEGDYDDKESTLIEVKPEIVTRCSKKEEQSEENEEEDLTDRLHKYLSGEMDADTFFQQEYYKSDPDSQLLPDEDDDDLEVWIVQAENPDEAEDGESITDDANVEELTITAEDEPEDDGDELAFLNATDNVTTEIVENIENIDTNIVEEFQEVDYFEDPEYDPENNDDNESVKSKDEKRPKKRWSTQAKHKCEICNKSYTTQSRLEQHKCHPSGNSEDKKDDLTCSICKENFLSKVRLQFHRQTHREGGWQHMSCDQCGRRDFASEHELFDHIYFSHKKPYTCPFDGCIKTFKLKKLLKTHVRDHGLKKYVCNICNQRFQVHQTLKEHMVLHLKVKPFQCHICHKYMSKASRLRMHLLVHTSQQNPAHILVCKICDSAFKDVTEAEAHCENSYDCEPKEDDKDGVYDEDMYEEMGIQILSPTRYYNDDEDVKSSWRKTDVLPKKENINSLEIDIEGNNEGPTLSNKHSLLMQLSDVARKTVTAVWIDKVFCCQYCEKVYYTKEALHQHRYIHNGVPEPYQCHLCEARFLTYARCTAHKSTHGYFKEGGAPSLRDFPVVKHYLCDLCDKSNLLWTTVSVHFRHHHKYNINRRLPPPCKNCCTQYNTSWELGKHRRIKHRKEVHAAAKAPIKVVNYSYKCMQCDQQLPNRAALTSHRKALHGDDDPGRKSNKTTGLLVCSECGKTYATKPALLTHIKWHTEHGVGIEAARRRKRAFGKGNHICSTCGLGFYSAANLRAHIDRIHEKSYKYTCEECGKGHFTHVEMETHKLTHTGERPFKCPDCPRAYVTKAILNKHYRNHTGERPYSCDLCGATFKTAHSRNYHKIKHENGKLPAPLIVLEVKGGNSKALQAALHDSFQVMGDKKEGRSVKQYSEDGDSIKEEIEEFHQEVNEEEVLVRTSEMDDSDDNIITVQEESPDGVHIVYKRIVRGLDENGCENEYTIEYEEVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -