Basic Information

Insect: Arctopsyche grandis
Gene Symbol: Bcl11b
Assembly: GCA_029955255.1
Location: JARCGT010000047.1:1297865-1301696[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00013 0.01 16.8 3.3 1 23 161 184 161 184 0.97

2 16 0.00051 0.04 15.0 1.3 2 23 204 226 203 226 0.96

3 16 0.00021 0.016 16.2 1.2 1 23 234 257 234 257 0.98

4 16 0.00016 0.012 16.6 3.5 1 23 271 294 271 294 0.98

5 16 0.00018 0.014 16.4 1.3 1 23 304 327 304 327 0.96

6 16 0.23 18 6.6 2.6 1 23 333 356 333 356 0.89

7 16 0.55 42 5.5 0.6 3 23 404 425 403 425 0.96

8 16 0.039 3 9.1 4.0 1 23 445 468 445 468 0.94

9 16 5.9e-07 4.5e-05 24.3 0.6 3 23 481 502 479 502 0.97

10 16 0.012 0.94 10.7 1.6 1 23 557 580 557 580 0.93

11 16 0.0084 0.65 11.2 5.5 1 23 588 611 588 611 0.97

12 16 0.18 14 7.0 7.5 1 23 623 645 623 645 0.97

13 16 0.022 1.7 9.8 0.6 1 23 652 674 652 674 0.98

14 16 0.04 3.1 9.0 0.9 1 23 680 704 680 704 0.97

15 16 0.19 14 6.9 3.7 3 23 713 733 712 733 0.98

16 16 0.61 48 5.3 0.8 1 23 768 791 768 791 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00013	0.01	16.8	3.3	1	23	161	184	161	184	0.97
2	16	0.00051	0.04	15.0	1.3	2	23	204	226	203	226	0.96
3	16	0.00021	0.016	16.2	1.2	1	23	234	257	234	257	0.98
4	16	0.00016	0.012	16.6	3.5	1	23	271	294	271	294	0.98
5	16	0.00018	0.014	16.4	1.3	1	23	304	327	304	327	0.96
6	16	0.23	18	6.6	2.6	1	23	333	356	333	356	0.89
7	16	0.55	42	5.5	0.6	3	23	404	425	403	425	0.96
8	16	0.039	3	9.1	4.0	1	23	445	468	445	468	0.94
9	16	5.9e-07	4.5e-05	24.3	0.6	3	23	481	502	479	502	0.97
10	16	0.012	0.94	10.7	1.6	1	23	557	580	557	580	0.93
11	16	0.0084	0.65	11.2	5.5	1	23	588	611	588	611	0.97
12	16	0.18	14	7.0	7.5	1	23	623	645	623	645	0.97
13	16	0.022	1.7	9.8	0.6	1	23	652	674	652	674	0.98
14	16	0.04	3.1	9.0	0.9	1	23	680	704	680	704	0.97
15	16	0.19	14	6.9	3.7	3	23	713	733	712	733	0.98
16	16	0.61	48	5.3	0.8	1	23	768	791	768	791	0.95

Sequence Information

Coding Sequence: ATGGAGGCGGGCGAGGAGGGGGGAGAGGGGCAGCCTCCTGTGGCGAAGCCCCCGCGCCCGGGACTTCTCACTCACATCGTCTACATCGAGGCCGAAGCGGAGGCGGagacggaaacggaaacggaaacggaagcAGAAGAGGAAGAGGAAGAGGACGCGGACGCGGAGGCTGTTGCTATGAATGTTGTTAATATATCGCGAAGTAGAGAAAATTCTCCATCAACTCCATCATCAATAGATGACGATGACTACAGGAATAGCAATTCTTGTGACAGTGGATCTCCAACTGACAATGCCTCCTCCGATGATGAGCGATTGAGAAATATCATCATAACcaaaaagaaaaagaagatTCCCAAACGTCGAAACACGTCTACTGCAGTCACTCCGCCCAGAGATATTTCGCTGAGCCAGGAGAAAAGAGCCACATCAATCGAAAGATTGATATCTGGTAATGATAAATTTATGCCCAAAACTTCATATCAGTGCGATATTTGTTCAAGAAATTTTCGTTCTGCATATCACCTCGACCAGCACAAAAGAAATAATCATGAAATAGGCGAAAGTCAAGAAGACATCAATTTGGCTGAAGATGAAGAAGGTCAGTGGACTTGCGAAAAATGCGGCCTCAAATACAATACGAAAACGTTACTTCTTTATCACTTGCGTAGAAAACATAATTCCGAAGTTAATTTTCAATACACTTGCCAATATTGTGGACTCGAATATGCCAAGAAAAATGgactatataaacatatgttaaGGAAGCACAATGTTCAAAGTTATTCATTTGAGAGCTCCAAAGAAAAGTACAAATGCAAATACTGTAGTGCAGTCTATGAATTTAAGCAGAGCCTCTTCAGACACATGAAAACCAAACATTTACAATCAGATTTGAATCAAATTGTTTATAAGTGCAAATTTTGCGGATCTTCATTTGGCCAGAGACAAAATCTATTTGATCACATTAAAGATGAACATGAACAAGCAGATGTTTATTCCTGCGAACATTGCGGGTATATGTGCatggaaaaaaatgaattggtTTTACATTTCAGCGAAAaccatctccaaaatacacTATTGAGCGGTGGTGAAGCTTCGGATAATGATGGCTCAGATGGAAACATGCATATCGATGAAAGTAGAAATGAAACTCACAAATCCAGTTGGTGGAAGACTACTGCCATTTCGAATGGTAGGAGAGCGTGTAAATTTTGCGATATGGTTCTTTCCAACGGAAACCGATTGAGGTATCATTTGAAAGTTAAACATCCTAATGAATTTCAAGCACTGAAAAACGAGCAGGTATTTGAAGAGGAAGAAAAGAAATACAAATGTGTCATATGCGGCTTgcagtacaaaaataaaatgtgtttaaGATATCATTCCAAATTAAAACATGGAAACATGATGAATCTTCCTAGTGCCGCATATGGTTGCGAATATTGTGGCCAAACATTTAAAACTCCCGCCAATTTAAAACAGCACATTAAGAAGAAGCATGAGGAAGATGATGAAGAATACGTGACCAGTACAAATCGATCCagaaacaaatacaaatgcgTTTATGTTGAAGTTCCGCCTAAAATTCCGAGTTGTgaggaaaaaattgaaaaagaggaACCAGAATCTGATAAGTCGGACAAAATGGATGTCGAAAAACGATATGTGTGTGATTTGTGCGAGAACACATTCACATCCATTAATTCGTTAAAACACCACAAACTTGCAAAGCACAACAGTCCATCTGATAAACTATTTCAATGTCCTCATTGTCCCTATTGTGCTAAATTCAATCAATATTTACAGAAACATCTATCTAGTAAACATCCTGATTCAGATTATGCCCCTCAACGAGAAATGCACATGTGCACTGTTTGCGATTACAAGAGCATGAACAAATACCACTACCAGAGACACTTCAAGAGTCATTTCACAGAAGAAAAGCGGTTCATGTGTGAATTTTGCGACTACAGAACAAACCTTCAGAGTTCTATTATCGTGCACAGACGAATTCATACCAAAGAAAAACCTTATGTGTGCGAAATAGAGAATTGTCAATATAGATGTGCTCAAAAAACTGCCATGACCATTCATCAATTAAGTCACAATCcggaaaaaaatacacaattctGTCATTTATGCAGTTTCAAGaccgtaaataaatatttgtttaaagcGCACGTCAACAAGCACAAGGCTGAAGAGAAGGAATATAAATGTGAACGGTGTCCCTGCATATGCAGAGATTTAAAGAGTTTCGAATGTCACAAACAGGTGCACGCCGACTGCGCAATTTTCAAATGCAGCTATTGCGAATTTGAAACTCAACTTCAGGTATCATTTGACAACCACATGAAAGCGGAACACCAGTTCACTCAGAGTCACATAGTTGCTCTCGAGGGACATATGAAAACTGAACATCAATATATCCAAACTAGTGCCATTTCGCTTGAGAGCCACATGAAACTTGAACCCCAGTACCATCCGAGCAATATGCCCCTTAATCTCGATAGCCATATGAAACCTGATCATCCGTACAATCCGAGCAGTATGCCGCTCCCGCTTGACTATCACATGAAATCACCAGAACACCATTATAATGCTGGTAATCTTCCCCACCCGCTCGATCGGCATATGAAATCCCCTGAACATCATTATAACATGAGTCACATGCCGCTCCCACTCGATGCTCATATGAAGCATTCGGGACATCAATACCACCCAAGTAGTTTTGTACCACTTCCACTCAGCAGTCATACGAAACCGGAACATCGATATATTCAGGCAAACGTCGAGCCTGGTTTATGTAAACCGACTAATTATGTTTATGATGGTCGTGCAGCTCAAATGGTTACCAACGAGATGGTCAATCCATATTTGAATCCAGTGAAATAG
Protein Sequence: MEAGEEGGEGQPPVAKPPRPGLLTHIVYIEAEAEAETETETETEAEEEEEEDADAEAVAMNVVNISRSRENSPSTPSSIDDDDYRNSNSCDSGSPTDNASSDDERLRNIIITKKKKKIPKRRNTSTAVTPPRDISLSQEKRATSIERLISGNDKFMPKTSYQCDICSRNFRSAYHLDQHKRNNHEIGESQEDINLAEDEEGQWTCEKCGLKYNTKTLLLYHLRRKHNSEVNFQYTCQYCGLEYAKKNGLYKHMLRKHNVQSYSFESSKEKYKCKYCSAVYEFKQSLFRHMKTKHLQSDLNQIVYKCKFCGSSFGQRQNLFDHIKDEHEQADVYSCEHCGYMCMEKNELVLHFSENHLQNTLLSGGEASDNDGSDGNMHIDESRNETHKSSWWKTTAISNGRRACKFCDMVLSNGNRLRYHLKVKHPNEFQALKNEQVFEEEEKKYKCVICGLQYKNKMCLRYHSKLKHGNMMNLPSAAYGCEYCGQTFKTPANLKQHIKKKHEEDDEEYVTSTNRSRNKYKCVYVEVPPKIPSCEEKIEKEEPESDKSDKMDVEKRYVCDLCENTFTSINSLKHHKLAKHNSPSDKLFQCPHCPYCAKFNQYLQKHLSSKHPDSDYAPQREMHMCTVCDYKSMNKYHYQRHFKSHFTEEKRFMCEFCDYRTNLQSSIIVHRRIHTKEKPYVCEIENCQYRCAQKTAMTIHQLSHNPEKNTQFCHLCSFKTVNKYLFKAHVNKHKAEEKEYKCERCPCICRDLKSFECHKQVHADCAIFKCSYCEFETQLQVSFDNHMKAEHQFTQSHIVALEGHMKTEHQYIQTSAISLESHMKLEPQYHPSNMPLNLDSHMKPDHPYNPSSMPLPLDYHMKSPEHHYNAGNLPHPLDRHMKSPEHHYNMSHMPLPLDAHMKHSGHQYHPSSFVPLPLSSHTKPEHRYIQANVEPGLCKPTNYVYDGRAAQMVTNEMVNPYLNPVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -