Agra009909.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000023.1:5210051-5211598[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.023 1.8 9.8 0.5 3 23 168 188 167 188 0.97 2 11 1.2e-05 0.00093 20.1 0.5 1 23 194 217 194 217 0.97 3 11 2.2e-05 0.0017 19.3 0.4 1 23 226 248 226 248 0.97 4 11 0.077 6 8.1 5.7 1 20 254 273 254 276 0.91 5 11 2e-05 0.0016 19.4 2.4 1 23 282 304 282 304 0.95 6 11 0.00018 0.014 16.4 1.9 1 23 310 333 310 333 0.95 7 11 0.0018 0.14 13.3 0.5 1 23 339 362 339 362 0.93 8 11 3.6 2.8e+02 2.9 3.2 2 23 368 386 367 386 0.80 9 11 5.9e-05 0.0046 18.0 7.2 1 23 392 414 392 414 0.98 10 11 0.12 9 7.6 3.4 1 22 422 445 422 447 0.86 11 11 0.00089 0.069 14.2 2.1 1 23 453 476 453 476 0.97
Sequence Information
- Coding Sequence
- ATGAATCAAGACCGCGTGTGCAGAGTGTGTTTGCGCGTAGGAGTACCCGGCGTTGCTCTGGATGAAGCTCGACGTAAACGCATGTTGAACATTATTCTCAGTCGGCCTGAACGCAACCGAGTCACGCGCAATGCACCTAACTTCATCAACTTCCCTTCTTGGATATGCTCCGAATGCGATCATAGACTTCCTTCAGCAGCCGCATTCGTTGCACTTTGTCGTCGTTCTGAACGTAGATTGCTCTGTGCGCAACGCTTGCAAATTCCATTTGATACGCTACACAGACAATACAAGAACAAACACAACAATgcaatacaatcaataaaaaGAGAAACCTCGCCTTTTCCAGTCCCATCTCCAAGTGAGACAGATCATTGGGATAATGATTCTGGAATGGTTTGCTTGGGAGTTCCATTGCCGATTGAAGTCAAAAGAGAAGATGATATCAAAGAAAAaatcatagaCAAAAATAGTAAAAGTAGATTTACTAAAATAGCTGACTGTAAAATTTGTGGGAAAACATTATTTGGAACGGTAGCTTTCAAAATGCATAAAAGAGTTCATCGTGGCGAACGTGTATACAAATGTTCTCACTGTGACGTTGCATTCATGAAAAATTCCGCTCTCACTGCTCATATTGAACGAATCCATATCAATCCACCGCCGCAAAAATCTTATGTATGTCACCTGTGCGGCAAGATAGTCAAGAGTTCcgcttatttaaaaattcatctcAACGGACACAACACCGAGATGCGGCACGAGTGTGAAATTTGCAAACGCCGTTTTAGACTTCGGTCCTCTTATTGCTCTCACAAATGGACACATGTAACCGAACGAACTTTTCTATGTAGCAAATGTGAAATGCGGTTTAAAACCAAGAGAGCCCTCAAGCGACATATGACTGTTCATGTTGAGGTGTGTGCTTTCAAATGCAATATTTGCAGCAAAATGTTGAAGTCCAGTTATACGCTGagacaacacaaattaaatgtaCACAAGAATGAGGGGCCTCACGATTGCGATGTTTGCAGCGCGTCTTTAGCTACAAAAGATAATCTGAAACAACACTTCCGTGCCATACACTCAAATGCACCTGGAAAATGTAAGATATGCAACAAGGACGTTACCAATCTGAGAGAGCACAAGAAATCGCATGCGAGTGAGATGATTTTCTCCTGCCACTTATGTTCAAAGCGATTCAGTCACAAACGGAGTCTTACCGCTCATGTAAAAAAGCATGGTTCTTCCGATTCGAGTAAATTCGTGTGCCATGTTGATGACTGTAATAAAGAGTTTAGCGTCCAATCCCTGTTGGATTGTCATGTTACTCAGCATCACAACAACTATACTCCATATGTTTGCCAATATTGTTCAACTGGATTCTATACATTGCATGATATGTCAAAGCACATAAAAAATGCCCACTTTAAGAAATTCGAAAATATTGCTGAATGTGAACAGGAAATGAATACCTAA
- Protein Sequence
- MNQDRVCRVCLRVGVPGVALDEARRKRMLNIILSRPERNRVTRNAPNFINFPSWICSECDHRLPSAAAFVALCRRSERRLLCAQRLQIPFDTLHRQYKNKHNNAIQSIKRETSPFPVPSPSETDHWDNDSGMVCLGVPLPIEVKREDDIKEKIIDKNSKSRFTKIADCKICGKTLFGTVAFKMHKRVHRGERVYKCSHCDVAFMKNSALTAHIERIHINPPPQKSYVCHLCGKIVKSSAYLKIHLNGHNTEMRHECEICKRRFRLRSSYCSHKWTHVTERTFLCSKCEMRFKTKRALKRHMTVHVEVCAFKCNICSKMLKSSYTLRQHKLNVHKNEGPHDCDVCSASLATKDNLKQHFRAIHSNAPGKCKICNKDVTNLREHKKSHASEMIFSCHLCSKRFSHKRSLTAHVKKHGSSDSSKFVCHVDDCNKEFSVQSLLDCHVTQHHNNYTPYVCQYCSTGFYTLHDMSKHIKNAHFKKFENIAECEQEMNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -