Basic Information

Insect: Arctopsyche grandis
Gene Symbol: -
Assembly: GCA_029955255.1
Location: JARCGT010000035.1:10032718-10036044[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0069 0.53 11.5 1.5 1 23 152 174 152 174 0.97

2 8 0.016 1.2 10.3 0.3 2 23 185 206 185 206 0.95

3 8 0.00072 0.056 14.5 7.2 1 23 212 235 212 235 0.97

4 8 0.00047 0.036 15.1 2.1 1 23 394 416 394 416 0.95

5 8 1.2e-06 9.3e-05 23.3 2.6 3 23 421 441 420 441 0.99

6 8 2e-05 0.0016 19.4 1.3 2 23 448 469 447 469 0.96

7 8 3.9e-07 3e-05 24.8 1.0 1 23 475 497 475 497 0.98

8 8 7.2e-06 0.00056 20.8 0.3 1 21 503 523 503 524 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0069	0.53	11.5	1.5	1	23	152	174	152	174	0.97
2	8	0.016	1.2	10.3	0.3	2	23	185	206	185	206	0.95
3	8	0.00072	0.056	14.5	7.2	1	23	212	235	212	235	0.97
4	8	0.00047	0.036	15.1	2.1	1	23	394	416	394	416	0.95
5	8	1.2e-06	9.3e-05	23.3	2.6	3	23	421	441	420	441	0.99
6	8	2e-05	0.0016	19.4	1.3	2	23	448	469	447	469	0.96
7	8	3.9e-07	3e-05	24.8	1.0	1	23	475	497	475	497	0.98
8	8	7.2e-06	0.00056	20.8	0.3	1	21	503	523	503	524	0.95

Sequence Information

Coding Sequence: ATGGAGGCGGAAGTGGTATCAGGGGTGGAGGGTCAATCTGTATGCCGAGCTTGCTTATCGCCTGCCTCTGACATGTGTGACCTCTTCGATTCAGGTCACAAGTTGGCCAGACTCCTAATGAATTGTTGCGATGTGAagGTGTTTCGGGACGACGGGCTACCGAGCCAAATGTGCAAACAGTGTGTCGTTTTGGCTACGAGTGCATTTGACTTCAAACACAAATGTGAACGAGCCGACTCTAAGCTCAGGAGCTATCTGATTACTATCGACGCTGTTGACATCAAACACGAGCAAGACATTCTATCCAATGAGACTGCCTCGGCTGAAAGTACAAATGATAATAAtggaatatgcatatgtattttgtgTAAAGAAAAGCATGAAACAATGGAGAGTCTACTCGAGCATGTTATTCAAAGCCATACAACTGGTGCAAAAATAGAAACTGAAAAATTTTCTTGTGAGTTGTGTAAAAGACAATACTCATCCGAATTTGATGTGAAAAAACATCAAGTCTCTCATAAGAAATTTTTAGTCGACAATAAATCTAATACATGTCCAATATGTAGAGAAGAGTTTCCGAGACATGATATCCTATTGAGGCACATGggTTATCACATTGAGGATTCATTCTTCGAATGTACGAtttgtaattgtttttttaCGACGAATTTACATTTAAAGCGGCACGTGAAAAGGAGACATGAATCGGATGATTATAAAATGTCCAAAAGCATTATTACAGCAGATATCAACGATTACGGAAACTTGCCTATTAAACTTGAACCAGACCATATATTTGATAACACAATAATTAAATGTGAAGAAAAGGATGCCGATTCAGTGGATAATGATTTAGTATTGGGCTCTGATGATTTTATTTCTAACATCACTGATTCGCACTTGAATTCTGAATATATGAAGAACTCTCCTGAAAACGATTACGATATGACTAATTCTGATTATGAAGACAAAACCGAATTCTCCAATTTCATAGATGCTAATGAAGAAATAGAAACATTGAAAAtaccgaaaaaaaagaaaaaattcaaaggaatgaaaattaaattcaaaaagaaaaataaaaacatgtgcGATAATGATAGCTTAAAATCTCAGCAAGTTTTACGAACAGAGAACATGTCCAATAATAAAAAGCGGCAAACTGGTGAAAGATCATTCTTGTGTTCGATTTGTGGCAAAGGCTATTTCAAACAGAATCATCTCGACAAGCACATGGAAAATCATTCCctAATTCTCTGCTCAATGTGTGGCAAATCTTGCAGTTCACGGTCGAATTTAGCCGTCCACATGCGACGACATTTAGGTGTTATGActtgtatttgtaaaatatgtggaAAAGGATATCCACGTACTACTGACCTTACTCTTCACATGCGaCAACACACTGGTGAACGTCCATTTGTATGTACGCACTGCAATAAAGGCTTTGCAAGATCAGACAAATTGGCTATTCATATGCGAATACATACTGGTGAAAAACCGTACAGTTGTCAAATATGCGGCAGATCTTTTGCACAATCGAACGACTTGACAGCACACAAGAAAAGAAACAGTTGCAATGTAAATCAAAATTCTTCCAATTCCCATTCTTCAGATTTGTCCATAACCAACGCGAGCACACTATCTGGTGAAAATCAACTAATGTTCTTAGCCCAAAACAGAACTGCCGACATGTTACCTGTCGACTCTTCTACGTATTCCAAACTGTCCGTGAAGAATGTTCAATCGCAAACAGTAGACGCCAGCAAAACGAGAAGAATTGGTAATAGTAATCAACACCAGAAAATGATGGGTGTGACGCCTAGTGGCCTGGACACTTTAACGGGAGAAGAAGAAGACTTGATAGCGTCGGTTCACACTCGCGCTTTAGATTTAGCGACGGCTGCAAACAATCTGCTGGTTGCGTCTGCAAACACGCCCAATAACAGGGTGATTGAATTTTTCAACGCCGAATCTATGGCAGCTAGGAGCGTCAGCGATTTGGTTAGACAGAATCTGATCGTTCCGGATATATTAACCACTCGAGCTATTGAACTCGCCAACGCTAATCACAGTATGTTAGCAGCTCATCAACGCGGAGAGTATGCAGACTACACCACGGCAACATTGCTACAAAACCTTTCTAATGTACAATCGGCACACTTTGATACGAGATAA
Protein Sequence: MEAEVVSGVEGQSVCRACLSPASDMCDLFDSGHKLARLLMNCCDVKVFRDDGLPSQMCKQCVVLATSAFDFKHKCERADSKLRSYLITIDAVDIKHEQDILSNETASAESTNDNNGICICILCKEKHETMESLLEHVIQSHTTGAKIETEKFSCELCKRQYSSEFDVKKHQVSHKKFLVDNKSNTCPICREEFPRHDILLRHMGYHIEDSFFECTICNCFFTTNLHLKRHVKRRHESDDYKMSKSIITADINDYGNLPIKLEPDHIFDNTIIKCEEKDADSVDNDLVLGSDDFISNITDSHLNSEYMKNSPENDYDMTNSDYEDKTEFSNFIDANEEIETLKIPKKKKKFKGMKIKFKKKNKNMCDNDSLKSQQVLRTENMSNNKKRQTGERSFLCSICGKGYFKQNHLDKHMENHSLILCSMCGKSCSSRSNLAVHMRRHLGVMTCICKICGKGYPRTTDLTLHMRQHTGERPFVCTHCNKGFARSDKLAIHMRIHTGEKPYSCQICGRSFAQSNDLTAHKKRNSCNVNQNSSNSHSSDLSITNASTLSGENQLMFLAQNRTADMLPVDSSTYSKLSVKNVQSQTVDASKTRRIGNSNQHQKMMGVTPSGLDTLTGEEEDLIASVHTRALDLATAANNLLVASANTPNNRVIEFFNAESMAARSVSDLVRQNLIVPDILTTRAIELANANHSMLAAHQRGEYADYTTATLLQNLSNVQSAHFDTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -