Basic Information

Insect: Arctopsyche grandis
Gene Symbol: -
Assembly: GCA_029955255.1
Location: JARCGT010000172.1:153223-154534[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00018 0.014 16.5 3.0 1 23 109 131 109 131 0.99

2 8 1.4e-05 0.0011 19.9 0.3 2 23 145 166 144 166 0.96

3 8 5.7e-06 0.00044 21.1 0.7 1 23 172 194 172 194 0.98

4 8 1.8e-05 0.0014 19.6 3.5 1 20 200 219 200 222 0.94

5 8 8e-05 0.0062 17.5 2.8 1 23 228 250 228 250 0.98

6 8 0.0026 0.2 12.8 4.4 1 23 256 278 256 278 0.98

7 8 5.1e-06 0.00039 21.3 2.8 1 23 284 306 284 306 0.97

8 8 0.00017 0.013 16.5 3.5 1 23 312 334 312 334 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00018	0.014	16.5	3.0	1	23	109	131	109	131	0.99
2	8	1.4e-05	0.0011	19.9	0.3	2	23	145	166	144	166	0.96
3	8	5.7e-06	0.00044	21.1	0.7	1	23	172	194	172	194	0.98
4	8	1.8e-05	0.0014	19.6	3.5	1	20	200	219	200	222	0.94
5	8	8e-05	0.0062	17.5	2.8	1	23	228	250	228	250	0.98
6	8	0.0026	0.2	12.8	4.4	1	23	256	278	256	278	0.98
7	8	5.1e-06	0.00039	21.3	2.8	1	23	284	306	284	306	0.97
8	8	0.00017	0.013	16.5	3.5	1	23	312	334	312	334	0.97

Sequence Information

Coding Sequence: ATGGAATGTAGACTTTGTCTCTGTGCTGCTCCAGTGGAGTCCTCTGTCTCCATCCACGACTATCCTCATCCACTAGTTCAACGCATTCTGACCGACTGTCAGCTACAAgTTGATAAAGATGATTCGTTGCCAGATACGATATGTCTTTTATGTAAAAACAATCTAAAATTGTTGAGCAACTTTAGGAACATTTGTATTCAGAGTGAAGAAACACAGAAACTAAGGTGGGCTGAAAGTTCAAATCTCAAAAAGGAAGAAATTATATTGGATGATTTAATTTGGGAGGATGATATTGATATTAACTCAACATCAAATaaaaacccatacaaatgtgaaactTGTTCCAAATCGTTCAAATACAGATCTATTTATATGAGGCATGTGATGACTCACAATAAAGACCCGCACAAATGTGATCAAGTAAAAACGCTCAGATGCGATATATGTTCTAAAATGTTCATGTTTAAATCAAGCCTCGTGGCGCATATGAATGCTCACCAAGGGATAAAACCATACCAGTGCGATGTTTGTTTTGTTTCATTCACTCAAAAGTCTAGCCTCAAAATGCATGCTCAAATTCACTCCGGGGAGAGACTTTTCAAATGCGACATTTGTCCAAAGTCGTTCAATCAGAGGAGTACACTCATTAACCATAAGCAATGTCATACTGGGGTGAAACCGCACAAATGCGAAATGTGTTCTAGATCGTTCACTCTAAAGAAAAACCTAGGTTTACATATGTTATCCCACACTGGGGTGAAATTACACAAATGTGACACATGTCCTAAATCATATACTACTAGATATCGCCTAGTGTTTCATATGAAATCTCACATTGGGACGAACTCGCACAAATGCGATACATGTTCTAAAACGTTTATTCGTAAATCAAGCTTAATAGAGCACATATATTCTCACAGTGGAATAAAACCACACCAATGTAAAGTCTGTTTGTTTTCATTCGCTCATAGGTCGAGCTTAATAAGACATGTTAAAGCTCACACCGGGGAGAAACTGTTGAAATGA
Protein Sequence: MECRLCLCAAPVESSVSIHDYPHPLVQRILTDCQLQVDKDDSLPDTICLLCKNNLKLLSNFRNICIQSEETQKLRWAESSNLKKEEIILDDLIWEDDIDINSTSNKNPYKCETCSKSFKYRSIYMRHVMTHNKDPHKCDQVKTLRCDICSKMFMFKSSLVAHMNAHQGIKPYQCDVCFVSFTQKSSLKMHAQIHSGERLFKCDICPKSFNQRSTLINHKQCHTGVKPHKCEMCSRSFTLKKNLGLHMLSHTGVKLHKCDTCPKSYTTRYRLVFHMKSHIGTNSHKCDTCSKTFIRKSSLIEHIYSHSGIKPHQCKVCLFSFAHRSSLIRHVKAHTGEKLLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00158547;
90% Identity: iTF_00158547;
80% Identity: iTF_00158547;