Basic Information

Insect: Arctopsyche grandis
Gene Symbol: -
Assembly: GCA_029955255.1
Location: JARCGT010000013.1:10295222-10297312[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00026 0.02 15.9 1.5 2 23 192 213 191 213 0.97

2 10 0.00013 0.01 16.8 0.6 1 23 219 241 219 241 0.99

3 10 2.4e-07 1.9e-05 25.5 0.1 3 23 247 268 246 268 0.95

4 10 0.0073 0.57 11.4 0.5 3 23 350 370 349 370 0.98

5 10 0.00032 0.025 15.7 2.8 3 23 381 401 379 401 0.95

6 10 8.1e-05 0.0063 17.5 0.4 1 23 407 430 407 430 0.91

7 10 0.0022 0.17 13.0 0.2 2 23 437 458 437 458 0.97

8 10 0.01 0.79 10.9 2.7 1 23 464 486 464 486 0.99

9 10 0.0053 0.41 11.8 0.5 1 23 492 514 492 514 0.97

10 10 0.00019 0.015 16.4 0.7 1 23 520 543 520 543 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00026	0.02	15.9	1.5	2	23	192	213	191	213	0.97
2	10	0.00013	0.01	16.8	0.6	1	23	219	241	219	241	0.99
3	10	2.4e-07	1.9e-05	25.5	0.1	3	23	247	268	246	268	0.95
4	10	0.0073	0.57	11.4	0.5	3	23	350	370	349	370	0.98
5	10	0.00032	0.025	15.7	2.8	3	23	381	401	379	401	0.95
6	10	8.1e-05	0.0063	17.5	0.4	1	23	407	430	407	430	0.91
7	10	0.0022	0.17	13.0	0.2	2	23	437	458	437	458	0.97
8	10	0.01	0.79	10.9	2.7	1	23	464	486	464	486	0.99
9	10	0.0053	0.41	11.8	0.5	1	23	492	514	492	514	0.97
10	10	0.00019	0.015	16.4	0.7	1	23	520	543	520	543	0.94

Sequence Information

Coding Sequence: ATGAGACATATCTTGGAAATCATGtccagaaatgaaaaaatatgtcgGCTGTGTTTGGGTGATAAACCCTGTTTGCAAATATTCGGCAATGGAATGTCCCTCTTTGTCAAAATACAAACTTGCTGCACTGTACagATGACTGAAAATGATGGATTACCTGATCAAATATGTGCTATATGTGCGAGCACTTTAGACTTGGCGGTGAATTTTAGAAAACAATGTGAAGATAGTGATAAGCTATTgcgaaataaaataactttacCTCATTTGAACGATGTGAAGGAAGAAATTTCTTCTATAAAAGACGAAATCTCGTACGGGATTAATACAAGTCCGAACATTGATGAATATTTCGACCGTAACTATAGAGAACACTCGATGCTACATTCTCCACTGAAAGAAGAACAGAGCACCTTTGACGATGGTAATATATCGGATTTAAGTGAGGACAATCCATTCATGAAACTAGTGGCGTATGAAAGCAGAGTTCGTGTAAAGAAATTGACTAAGCAACTCAATAACAACAATTCGTTTGAGAGTAAAAATCTGAAAGTTAAAAGTCGTTCTTGTAAGCAATGTCCGTCTTGCGGTAAAAGATTTTTGAAATCGAGTTCATTAAATAAACACGTATTGAAGCACAATTTGGAGAAGCCCTATAAGTGTGGGATCTGTTCTAAAGATTTTGATTATATAGAGAAGTTAAAAGAACATTTACAAACTCACGACAATGAAAATCCTTGTGAAATATgcggaaaaatatttaaaagagcTTATGATCTTCGGAGGCATATAAAATTGGTACACAACAAATCGACAGATATAGGATATAGAGTAAgtaatattattaaaactgaaattgatgatatatgtatatacgattcAACGAAAGATGATAGCGACGGCGAGAAAGATTTCACGTGCTTAGAAGTTGACGGGTCAGGGAATCAAAATGCTTCTAAAAGAACTGGAGAATTTACTTTGATTGGAGAAATGTCTGATAACATCggtaaagataaaaaaagaacACCGCGAACGAGAAGTACGCTGTGTCCGTTTTGCGGTAAACTTTTCTTACGACTAGCCTCAATGAATAAGCACATTAAAAGTCACAGTGAAGTTGTTGCGGACAAACCACATTTGTGTCTTCTTTGCACGAAAGCGTTCCGTTATGAAAAGCAACTTAAAGATCATATCAAAACACACGTCGACACGAGAGAATATCCCTGTGACACATgtgataaaatgtttaaaacatCTTACGATGCTCGAAGGCATTcagatattgtacataaaagAAAAAGAATGGCCCAATGCAAAGTCTGTGGTGACAAACTTGCAACTAGTTCTGGTTTGAAgAAACATTTACTCATACATACTGGTGAGAAACCGTACGAATGTGATTTTTGTCAGCAACAATTTACATTTAAGAACAGTTTAGTGTTTCATCTCCGAACTCATACGGGTGAAAAACCGTATGCGTGTAAATATTGTGATGCCAGATTTTCCCTGTTGAGATCGGTGAAAGATCATGAGCGGTTGCATACGGGAGAGACGCCTTATCTATGTCCGGTATGCGCCAAGGGATTCACACAATTGTCAAACATGAAAAGTCATTTTAGAAATAATCATAAAGGAGTAGAGTTTAAGTATCagtttaaaaaatctaaaaagttTAAAGAAGGACATATGAGTAAGTTATAA
Protein Sequence: MRHILEIMSRNEKICRLCLGDKPCLQIFGNGMSLFVKIQTCCTVQMTENDGLPDQICAICASTLDLAVNFRKQCEDSDKLLRNKITLPHLNDVKEEISSIKDEISYGINTSPNIDEYFDRNYREHSMLHSPLKEEQSTFDDGNISDLSEDNPFMKLVAYESRVRVKKLTKQLNNNNSFESKNLKVKSRSCKQCPSCGKRFLKSSSLNKHVLKHNLEKPYKCGICSKDFDYIEKLKEHLQTHDNENPCEICGKIFKRAYDLRRHIKLVHNKSTDIGYRVSNIIKTEIDDICIYDSTKDDSDGEKDFTCLEVDGSGNQNASKRTGEFTLIGEMSDNIGKDKKRTPRTRSTLCPFCGKLFLRLASMNKHIKSHSEVVADKPHLCLLCTKAFRYEKQLKDHIKTHVDTREYPCDTCDKMFKTSYDARRHSDIVHKRKRMAQCKVCGDKLATSSGLKKHLLIHTGEKPYECDFCQQQFTFKNSLVFHLRTHTGEKPYACKYCDARFSLLRSVKDHERLHTGETPYLCPVCAKGFTQLSNMKSHFRNNHKGVEFKYQFKKSKKFKEGHMSKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -