Agra009906.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000023.1:5052217-5053767[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.9 3e+02 2.8 0.0 2 14 55 67 54 71 0.79 2 12 0.00024 0.019 16.0 1.1 2 23 190 211 189 211 0.97 3 12 3.9e-05 0.003 18.5 0.7 1 23 217 240 217 240 0.97 4 12 8.1e-08 6.3e-06 27.0 1.2 1 23 249 271 249 271 0.98 5 12 0.00092 0.071 14.2 1.0 1 23 277 299 277 299 0.98 6 12 1.6e-05 0.0012 19.8 3.5 1 23 305 327 305 327 0.98 7 12 4.1e-05 0.0031 18.5 0.6 1 23 333 356 333 356 0.96 8 12 0.00013 0.01 16.9 0.5 1 23 362 385 362 385 0.95 9 12 1.2 96 4.4 0.9 3 23 392 409 391 409 0.82 10 12 0.00045 0.035 15.2 7.4 1 23 415 437 415 437 0.98 11 12 0.49 38 5.6 2.3 1 16 445 462 445 470 0.84 12 12 0.00013 0.01 16.8 0.7 1 23 476 499 476 499 0.97
Sequence Information
- Coding Sequence
- ATGATAAATCAACATGTGTGTAGGGTGTGCTTACGGGTTGGAACACTCGGGGTTGCTCTGGATGAGGGTAGACGCAAACGCATGTTGGCCATCATCAGTAACCGACACGAACGTAAAAGAATCACACGATGTACTTCCAAAGACGACTACTTACCCTCATGGGTATGTTCTGAATGCGATCGTCGACTTCCTTCAGCAGCCGCATTCGTTGCACTATGTCGTCGCTCTGAACGAAGATTGCATCGGGCACAACGATTACAGATTCCGTTTGATACTTTACACCAACAGTACAAGACAAACAGATCTTCTGCTGTACTACAGTCGATTAAAAAGGTACCGTTTAACTCACCAATCCCATCTCCAATTGAAACAGATCACTGGGACGACAACTGTGAAACGGTATGTGAGGATATTCCATCACCGATTGACATAAAAAATGAAGTCAAGATAGAAAACgaacttaaaataattaaggtattaaaatgcaaaaaagACAAATGCAAACCAAACTGTcctaaaagtataaataaagataaaaacaGCGTAGGAAGACCATCTAAATGTAATGAATGCAAAGTCTGCGGAAAGTTTTTCCGTGGTACTTACGTTTTCAGAGCCCATAGAAGAATGCACCGTGAAGAGCGAGCATACAAATGTCCTCATTGTAAAGCTGCTTTCATGACAAACACGGCTCTCACATCTCATATCGATCGCATACATGTAAACCCCCCACGGGAAATGTCTTTTATTTGCCACTTGTGCGGGAAAGTATTCCCGAAGCGCAGTAGTCTGCAAGCACACATGCAATCGCACAACACCGAGATGCGCTACCAGTGCCAGATCTGCAAACGTCGATTCAGATTAGGTAGCACTTTTATAGCGCACAAATTAGTACACACCGGTGAGCGACGTTTCCCATGTTCCAAATGCGACAAACGGTTCGGCTCATCTTCGCATCGCAGACGACACATGTCCGTCCACGCCGAAGAGTGCACTTTCAAATGCGAAACTTGCGGGAAAATGTTGAAATCGAAAATCACGCTGAAACAACACATAGAAAACGTGCACAAATGGGAAAAGTCTCACGTGTGTGATGTATGCGACGCCTCTTTGAGCACTAAAGAAAATTTGAAACAGCACTTCAGAGCGATTCACTCCGATGAGCCGGGCTTGTGCAAGATATGCAATGAGCAGGTTTCGAATCTGAGAGAACATAAGCGTTCGCACACGAGCGAGATGCTGTTCCATTGCCATTTGTGTCCAAAGCGATTCGGTCATAAGCGCAGTCTCACAGCTCATGTGAAGAGGCACGAAGACTCGGGGTCGAGCAAATTCGTGTGCGATGTCAACGATTGCAATAAAACGTTCAAGATGCAATGCCTGTTGGACTTTCACTTCGCAAAGTATCACAATGAACATACACCATACGTTTGCCAGTACTGCTCGAAAGGATTTTATACATTACCCGATATGACGAAGCATTTGAAAAATGCTCACTTTAAGAAATATTCAGTTTCTTCTACAGAAGACGACATAGAAACGTATTCGTAA
- Protein Sequence
- MINQHVCRVCLRVGTLGVALDEGRRKRMLAIISNRHERKRITRCTSKDDYLPSWVCSECDRRLPSAAAFVALCRRSERRLHRAQRLQIPFDTLHQQYKTNRSSAVLQSIKKVPFNSPIPSPIETDHWDDNCETVCEDIPSPIDIKNEVKIENELKIIKVLKCKKDKCKPNCPKSINKDKNSVGRPSKCNECKVCGKFFRGTYVFRAHRRMHREERAYKCPHCKAAFMTNTALTSHIDRIHVNPPREMSFICHLCGKVFPKRSSLQAHMQSHNTEMRYQCQICKRRFRLGSTFIAHKLVHTGERRFPCSKCDKRFGSSSHRRRHMSVHAEECTFKCETCGKMLKSKITLKQHIENVHKWEKSHVCDVCDASLSTKENLKQHFRAIHSDEPGLCKICNEQVSNLREHKRSHTSEMLFHCHLCPKRFGHKRSLTAHVKRHEDSGSSKFVCDVNDCNKTFKMQCLLDFHFAKYHNEHTPYVCQYCSKGFYTLPDMTKHLKNAHFKKYSVSSTEDDIETYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -