Basic Information

Insect: Arctopsyche grandis
Gene Symbol: -
Assembly: GCA_029955255.1
Location: JARCGT010000017.1:3851725-3853779[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.9e-05 0.0046 17.9 0.4 1 23 228 250 228 250 0.96

2 15 0.049 3.8 8.8 2.6 1 23 256 278 256 278 0.96

3 15 0.00059 0.046 14.8 6.9 1 23 284 306 284 306 0.96

4 15 1.8 1.4e+02 3.8 9.5 1 23 311 334 311 334 0.95

5 15 6.8e-05 0.0053 17.8 0.7 1 23 362 384 362 384 0.97

6 15 0.0019 0.15 13.2 0.6 1 23 390 412 390 412 0.96

7 15 5.7e-05 0.0044 18.0 0.6 1 23 418 440 418 440 0.95

8 15 0.0061 0.47 11.6 9.2 1 23 445 468 445 468 0.98

9 15 0.082 6.3 8.1 1.8 1 23 475 497 475 497 0.94

10 15 2.4e-06 0.00018 22.3 0.9 2 23 501 522 500 522 0.97

11 15 0.003 0.23 12.6 0.3 1 23 532 555 532 555 0.97

12 15 0.00068 0.053 14.6 0.4 1 23 561 583 561 583 0.95

13 15 0.033 2.5 9.3 0.3 2 23 590 611 590 611 0.96

14 15 1.7 1.3e+02 3.9 1.1 1 23 617 640 617 640 0.85

15 15 0.0028 0.22 12.7 2.0 3 23 647 667 646 667 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.9e-05	0.0046	17.9	0.4	1	23	228	250	228	250	0.96
2	15	0.049	3.8	8.8	2.6	1	23	256	278	256	278	0.96
3	15	0.00059	0.046	14.8	6.9	1	23	284	306	284	306	0.96
4	15	1.8	1.4e+02	3.8	9.5	1	23	311	334	311	334	0.95
5	15	6.8e-05	0.0053	17.8	0.7	1	23	362	384	362	384	0.97
6	15	0.0019	0.15	13.2	0.6	1	23	390	412	390	412	0.96
7	15	5.7e-05	0.0044	18.0	0.6	1	23	418	440	418	440	0.95
8	15	0.0061	0.47	11.6	9.2	1	23	445	468	445	468	0.98
9	15	0.082	6.3	8.1	1.8	1	23	475	497	475	497	0.94
10	15	2.4e-06	0.00018	22.3	0.9	2	23	501	522	500	522	0.97
11	15	0.003	0.23	12.6	0.3	1	23	532	555	532	555	0.97
12	15	0.00068	0.053	14.6	0.4	1	23	561	583	561	583	0.95
13	15	0.033	2.5	9.3	0.3	2	23	590	611	590	611	0.96
14	15	1.7	1.3e+02	3.9	1.1	1	23	617	640	617	640	0.85
15	15	0.0028	0.22	12.7	2.0	3	23	647	667	646	667	0.97

Sequence Information

Coding Sequence: ATGGAACCCAGCAATGGTCTTTCGGAGAGCGTATGCTCATCTTGCttagaaaaaataaagataGCCTATGAATTGATTTTACAATGCGAGAAATCAGAACAGTTATTGAAGAAATCTATGGATTGTCTATATCAAAGATTCGTGAGTGTTGTATCTTCGGCGTCGGTACAAGACAACGACACCATACTTATCGTGCTGCCAGAGTCTGAAATAATCGACAATTCTGAAAATGAAGTATCAAAAGAAAAATCGCACAAAACAGACGACGTCAACGATAATCTGTTcgtattttctttaaaaaaggaAGATTTCGACAACGGCCAAATAAAAGATTTTAACGCTTTGAATTTAAGCCACGAattgatgaaaattaaaaatgagcaaATCGTAAGCTTCAAAACGCTTGATGTAAAATATGAACCATTAGATAGTACATGTAAGGAAGACTTGTATTCATTGGATGTGAAGCAGGAACGGTTCGACGAGGAATCGATGAATGATGTGTTAAAGCCGGACGCGCTTGAAGTTAAGAGTGTAGATTACGACTATTTTGTCAATATTGTAACAGAGGATGAGGAAGCTTTAAAGTATGACGAGCAGTCTGAAAGTTCGATAACCGAAGAttctatggatttttttttagatccCGTACCGAAAACCGTAAATAGACGAGTGCCGGTATTCGACTGTACCATGTGCAATGAGAGCTTTGTCACCAAGGGTGAATTGAGACTGCACGCGAGTAAGCATCCGAAGGGCACCAAACATGTATGCCGAATATGCTCACGGTCATATCGGAAAGTGAGCATACTAAAGAGGCACTATGTGACGCACTCGGACCAAAAGAAATACTGCTGTTCGCATTGTGGACGTACTTTCTTCCACGAGAATTCGCTGAACGCTCACATGATCTTCCACGAGGAGAAGAAGCACTGTTGTTCACTGTGCGATAGCAAATTCCACTTTAAACACTTGTTGTTCGATCATATGAAAGTCGAACATGCTGTGCACGAAATCGACGACGATAGTCTGAATAAACTTCTGCACTGTCCTGATAGGAAAGAGCCGTTCAAACGTGTAGACTTTGACTGCACAATGTGCACCGAGACGTTTGAGAATGCCGACGATCTGAAGGAGCATAAGAAGTCCCATCCCGAGGGAACGAGGCATGTGTGTAAAATTTGCGGAAAGACTTACTTGGAAGTGAGCACTTTGAGACGACACTTGGTAGTCCACACGGGTAAAAAGACTTACCTCTGTCCCGTCTGCGGCAAATCCTTCTTCTACAGGAACGTCCTCAAATCCCACATGATCTACCACAGCGAGAAGAAGCACAAGTGTCATCTGTGCGAGAAGACGTTTCACATGCGGCACATGCTCCAAGAGCACATCCGCATGTCTCACTCGAACAACCGATACAACTACATGTGTGAAATATGCGGCAAGCTGTGCAGCTCTAGTCGGAGATTCGGCATCCACAAAGAGAGCCACAACACCATCTACTGCCCTATCTGCGGCAAGAGTTACAGAAACTTACGGTATTACAAGCAGCATCTAAAGACGCACAATGGTATGCCGACGCCAAAGAAGTCGTACGTCTGTGACTATTGTGGCGAAAAGAGAACGTTGAAAACTCTTCTGGAGTTGCACATTCTCAGCAAGCATCTCAACGAGAGACGGTACTCTTGCAAATTGTGCAGCAAGGCGTTTTATAGTAGGGGGAGTTTGAGCGAGCACGAGGTAGTCCATACGAGGAAGAAGAGCGAAACTTGTAATATATGCAGTCGGATCCTCGTCAATAGGAAGGCTCTGATCTTGCACAATAGGTTGCACACGGGCGAAAGGCCATATCCTTGTAATATGTGCGAGGAGAAGTTTCTGTCCAGTAGTCGGAGGTTGGCTCACTTCAAGAGCAAACACGGAGAGAGAACGGAACATTGCACGCTGTGTCCGTCTAAGTTTTACTTACGCAGTGATCTCAACAAGCATATGCTGGTGCATTCTAAAGATCCGAAGAAAGTAAAGAGAGAATTTACGGCTAACGTTATTGCATAG
Protein Sequence: MEPSNGLSESVCSSCLEKIKIAYELILQCEKSEQLLKKSMDCLYQRFVSVVSSASVQDNDTILIVLPESEIIDNSENEVSKEKSHKTDDVNDNLFVFSLKKEDFDNGQIKDFNALNLSHELMKIKNEQIVSFKTLDVKYEPLDSTCKEDLYSLDVKQERFDEESMNDVLKPDALEVKSVDYDYFVNIVTEDEEALKYDEQSESSITEDSMDFFLDPVPKTVNRRVPVFDCTMCNESFVTKGELRLHASKHPKGTKHVCRICSRSYRKVSILKRHYVTHSDQKKYCCSHCGRTFFHENSLNAHMIFHEEKKHCCSLCDSKFHFKHLLFDHMKVEHAVHEIDDDSLNKLLHCPDRKEPFKRVDFDCTMCTETFENADDLKEHKKSHPEGTRHVCKICGKTYLEVSTLRRHLVVHTGKKTYLCPVCGKSFFYRNVLKSHMIYHSEKKHKCHLCEKTFHMRHMLQEHIRMSHSNNRYNYMCEICGKLCSSSRRFGIHKESHNTIYCPICGKSYRNLRYYKQHLKTHNGMPTPKKSYVCDYCGEKRTLKTLLELHILSKHLNERRYSCKLCSKAFYSRGSLSEHEVVHTRKKSETCNICSRILVNRKALILHNRLHTGERPYPCNMCEEKFLSSSRRLAHFKSKHGERTEHCTLCPSKFYLRSDLNKHMLVHSKDPKKVKREFTANVIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -