Agra017755.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000063.1:4379173-4392081[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.33 26 6.1 0.1 1 19 530 548 530 550 0.88 2 20 0.0022 0.17 13.0 0.3 1 23 560 583 560 583 0.91 3 20 3.2 2.5e+02 3.1 6.7 1 21 742 762 742 763 0.94 4 20 0.0061 0.47 11.6 2.1 1 23 776 798 776 798 0.95 5 20 0.035 2.7 9.2 0.1 2 23 808 831 807 831 0.94 6 20 0.0049 0.38 11.9 0.8 1 23 835 859 835 859 0.97 7 20 8.6e-05 0.0067 17.4 2.0 1 23 864 886 864 886 0.98 8 20 0.018 1.4 10.1 2.8 1 23 892 914 892 914 0.97 9 20 6.1 4.7e+02 2.2 0.1 2 21 925 944 924 945 0.90 10 20 3.6e-05 0.0028 18.6 1.0 1 23 1176 1198 1176 1198 0.98 11 20 7.3 5.6e+02 1.9 3.0 1 23 1205 1227 1205 1227 0.89 12 20 0.38 30 6.0 8.2 1 23 1257 1280 1257 1280 0.94 13 20 0.0002 0.016 16.3 0.7 1 23 1287 1310 1287 1310 0.97 14 20 0.0019 0.15 13.2 0.1 1 23 1324 1347 1324 1347 0.95 15 20 0.0083 0.64 11.2 0.3 1 23 1362 1384 1362 1384 0.97 16 20 0.00094 0.073 14.2 2.9 1 23 1389 1412 1389 1412 0.97 17 20 0.089 6.9 8.0 4.0 1 21 1418 1438 1418 1440 0.95 18 20 0.027 2.1 9.6 4.1 1 23 1446 1468 1446 1468 0.98 19 20 8e-05 0.0062 17.5 0.1 1 23 1474 1496 1474 1496 0.98 20 20 0.03 2.3 9.4 5.2 1 23 1502 1525 1502 1525 0.94
Sequence Information
- Coding Sequence
- ATGAAGAACCAAAAGAGTCAAGCCATGACGCTTACGCTGTGTCTCGAAGACAATGCAGGCAAAGATACAAATCTTGAAGTGAAACCGAATGATGACTTCGGATCGTTCCTGCAGAGAGCAAAAAAAATTTTGGGATATGCACCTCAATTGACGGACATAACCGAAGGCAAGGTAGTTTCTTTGAAGGATAACATATATAGGTTTCTAATTGAAGCCGAAATGAATAAAGGAATAGAGAAAGAAGCTGAGAAGAGTGCAGAGGAGGAAGAAGAGGAGTTTGGTGAAATCGAATACCTCGCCGAAGACGAAGAAGAATTATTTGACGTTAAAGAAGAGAAACCGCCCCTGATTGTAAATGAGTCGACTGTTGGCTACGAGTCTGAAGAATATGCTCCGACAGAATACTTGGAAGAGGACAGCGATGAGCCCGGTATTGTCGATTTGGAAATTTTAGATTCTTCTCTAGAAGAGGACATCGACGACTTGGAAAATTTAGAAATGTTGCCGCCCAAGAAGAAAGCGCGGCTGGCCGACGACGATTTGGGGGTCGACGATATATTCAACACGTTAACTGTGCCCGTCACTGAAGATACCGAGCAAATATATACGACGAAAGAGCTCTTGGACGTGTTGGGCGATTCGTCGGATGAAACCCCCACTAAAAGCAATCTGAAGAACGGTCATTTAGGGAGCAAGACAAAGATTAAAACTAAAATCGGTTCTAAGTATGCGTACGAAAGGCAAGCTATGCATAAACACAATTTAAAGACCAAGTCGAAGACGAAAGTCAAAGCGAACGATAAAAAGTCAAAGTATTCTACGAAATATTCTAGTTTTTCCAACGACTTGAAAGACGTCAGCAAGAGCTCATTTTTCGCCAAGCGTCAAATGGAGAAAAGTTTAGGCATCAAAAAGCTCAAACAGGACGAAGTCGTGCCTAACAAAAAGGCTGACGTAAAGAAGAAAAATTCCAGATTGAGTTCATTTGATCTAGCCATGCTGAAACGGACCGTTCGCCAACCCATCATCGCCCTTCCGAAGATGACCGATCTCGATATCAGAGCGTGTCAGGAGTCGGTCGACGAAATCGGCAACTATATATCGAAAAGCGCGCAAAAATCTGAAAGCTTCAACTCCGTGTCTCTGGACGATTCCAGATTTTTGCCCGCCAATTATGAGGATATCGACAATGAAGGTGTGTATGATTACATGGAGGATGTGTTCAACCAGACCGACATGAACGATTTGCTGACCGTCAGGAAGGACAAGAGTTTCGTCCCCGCAAAGCCTAGCAAGAAGGCGGTCAAAGATGAGATTTCGAAAGCTGTTGGCGGCATTCACAAAGCGATGGGGCTCGATAAGAAGTTTTCCAATTTAGTCAGGCCCGCAAAGAAGCCTAGAGGCAGGCCGCCCAAGAAATTCCTTAAGCTGATGAACGATGAGCCGATCAAGAAAGAGGCCGATTACGATAGTCACATGACGTTTTTGGAGAGTGTTGTGAAGAGGGAACCCATCGACGATGAAGACGACGACTATATGCCTAGTAAAGATAATTTAGACTGGATGAAGAATAAAAAGAAGGGAAAATATAGTTGCAGAATGTGCTCGACTTCTTTCACACGCTTGATGCAGGCCGTAAACCATGCACTGTGTCATCAAATACCGGGCAAAGCTATTTTCCCATGCATTTTATGCGCCTACGCATTTACAACATATAGCGAGCTCCAGAAGCATATGAAGAACGATCACCGTAAATCCAAATCTCCGTCGATGCTACCGGACGGTACGCCAAAGCCCAAAGGTAAACCGGGACGGCCCAAGAAAGGCGGCGTCCTCACACCGACGCTGATCAAGCCGGAGATAATGGACGATGAAGAAGTTTGCGACGTGGAAATGCTGGAGGAGTGGTTGGACGAGGACGACACGTTGGTGGATTTCGAAAATGTGACGGAAACGGAGGAGTTTGTTGAGTTGTTGAAGGCCGAGTCGATCGAATTGAAGGATGAAGTTGATGAACATATTGAGGCGAAGGAGGATGCGGAAGATGACGATACGAAGCAGGTCAATAAAGTTGAGGAAATTGATTTTACGGTATCTGGTGACGAAGAGTGGCTGTTGGACGAGGGCGAGGAAGAAGCCGCTAGAGTGTCCGAAGACAGCGATACCGTAAAAGAATCAAAATCAATTCAGAAGAGACGAGGGCGGAAACCTAAATTTAGGAAATTCAAATGCAGCACATGCTTacGCTGTTACGATAGTCACAACACGTTGCGTAGTCACGTATGCAGCGGACCTAAAGAGAAACTGCGAGGAACTCGTGGCGCTTATCGTTGTGCTCTGTGCGGTCAAACGTTCACTACTCGTAGACGATTGGTCTATCACAGATCGTTCCACCAGGTGGAATTGCTCGAGAGGAAAATGGTCTGTAAAGATTGTCCGGGGCGTAAGTTTACTTCGGAGGCCGAACTCTTCGATCACATAAACAATGAGCACAATGTTGATTTCGTGTGTGAAGAACCCGGATGCACAAAACAATTCCATCTTCGGTCGGCTCTTAGAGCTCACTCTCGCACTCACGGCACAAAGTCGTATCAGTGCCAAGAGTGCGGTAAACAATTCTACGATATACACAATCTGAAAGAGCACAACATCACACATCTGACGgTAAAACCATTCCAATGTCACATTTGTCTTAAATTCTTGAATAGAAGATCTCGTCTGCGAATGCATTTACTCGCGCACGTGTCTTGTCCGGTGGAAAATTGTGTACTCGTGTGTAAATGTTGCAAGATGGCTTTCAAAGATGCTGCTGACGCTGAGGTTCATATTCTCAACGCTGAAGATTGCCGCAATTACGTATTGGCGAATGAGAATGAAGAGTTGTTGAGCGCTTTTGAGTCTTCGGATGataaaaaattcattgaaatagATATCGACGATCCCCCTAAGATTTCCATTCGTCTGGAGACTACCGTCGACGATATAGTCAATGAAACGCTGGCAGACAACGAAATAGTCAGCATGACTACGGAAACCACCACCCTCATACAGGTCAAAGATGAGAATGATGAGAACGCCAGTGAAATGCTCGGTGGAGACGATTCGATGAAGGCGCTTCTTGCTGAAGTGGGCGCCGTGAAGCTCATGCTGACTGAAGACGGGACTGTCGGAGAGATCTTGGAAGACCATTCCGTCGCGCCCGATGATAACGCGCCGATCAACGAAGAGTCCAGAAATCGACAGAGCGTCAAAGACCTGCTCGAAGGAGTCGGCACTATAAAAGATTTGCTCGAGAACGTGGATCCGATGGCCGATCAGAACGTTGTGAATGATTCGGAGACCTCGGCCATGATCACCGAGCTTCAGAATGAGCTGTTGGACAGTTCCAATGTAATAAAGGATGAAACGGGTGTGAAGAATATGACGTTGGTGAGGAACAGTCAGATTTTCACCGAAGACGAACTCATGTCGCAGTTGAGCGAAAATTCGAAACTTTTCATCAAAGTCGTTAAGATCAAAGTCGTCTATCGGTGCGAGTATTGCGAAAAgaaTTATTATACGAAGGATGCGCTCAATGCACACAGATTGTCTCACGATGGATTGAGGAATCCTTTCATATGCAATGTTTGCAAAGCTGCATTCTCTACGTTTGCCAGATGTACTTCGCATAAAACGACGCACGGATTTTACAAGTTAAACATAGAAGAAGACAAAGAGAAGAATCCGAACGACGTCACCAACCATGAAAATTTTCCAGTAATTAAATATTTCCTTTGCCAGcatTGCAGTAAAACATTTTTACATTGGACGTACCTTCAAGTGCACAGAAGGCACAAACACAGTCagaatacatattatttcaattgtaaAATATGCGGAGACAGATTCACCGATAGtTGGTTGCTAAATTCGCATCGTCGGAAAGTGCACGCCGAATCTATAAACTGCAAAAAAGGCGCCAACACTAGTTACAAATGTGCCGATTGTGGCGAGGGATACAATAAAAGGATAGAATTGGCGAAGCATCGTTTGGAAGTGCACAGCGATCCGTCTTTGATAGAGCAAAAAAATAAGCCTGGTCCGTTTGCTTGCACCTCGTGCGATCGAATGTATCAGACAAAAGTCGGACTGGACGGCCATATGAGGTCGCATAATGGAGATATCTACGTGTGCGATCTGTGCGGAAATAGTTTCAATCATCGCACCGGACTTGAAACTCATCATAAacgTGTACATTTGCGAGAGCAACGATATTCTTGTCGCACTTGCGATCAAAACTTCTTCACGAGCGTTGATTTGGAAAATCATAAGAGATGTCATTCGGGTGAGAAGCCCTTCCCTTGTGAGTTCTGTCAAATGTCTTTCCGTACGAAAGGTCGAAGAAACGAACATCACAGGACTCACACTGGAGAAAGGCCATACCCATGTGACATCTGCGGAGTGGCCTTCCGGAGGTCGAACGCTATGAAAAATCATCGCTTGATACACACTGGAGAACAACGACACAATTGTCCTCATTGTCCGAAATTATTCCACGTCTATACCAATCTCAAATCGCACATCAAAGCTAAGcATCCTGAAAAGTGTATCATTTTGGAAATTGACGGAGAGCCCATCGATACTTTGGAAGAATCGTTGAAAATAATAACGGACGCTGATAGCGCCGAGGTTATAACCGGCGATTTGGCGACGAACGATGCTGGAAATATGCTCGTATTGGAAGACGTTATTATCGAAGACGAGAGCGAAGCTATTCTCCGTCAAGACGAGTCGGCTAATATTTTAGAATATACATACGAGACTGATATCAATGCACACGTTCAAGGttctGAAATGCAATGTGATACTGTGGAGTATGTCGATGGAACTATCGTCGATGGTAAAAATTCTAAAGTTCATATTCAGCTGCTGGATGGCTCCGAGCATGAGCAGGGTTTGCTTTATACCGTCGAAGACGCTTCTATGCATCTCATTGAAGGTGAAGTTCGGTACGCGTTAGTTGACGATATAAATGACGATCATAAACAGCAGTTCACTATCATAGACGAGGATCATAAGCAGCAATTTACTATCATCGATGACAATAATAAACAACAGTTTACTATCATAGATGACGATCATAAGCAGCAGTTCACTATCATCGATGAAGACCAAGAAGGGGACCCCAAAGGGGATTCtgtatattatacttaa
- Protein Sequence
- MKNQKSQAMTLTLCLEDNAGKDTNLEVKPNDDFGSFLQRAKKILGYAPQLTDITEGKVVSLKDNIYRFLIEAEMNKGIEKEAEKSAEEEEEEFGEIEYLAEDEEELFDVKEEKPPLIVNESTVGYESEEYAPTEYLEEDSDEPGIVDLEILDSSLEEDIDDLENLEMLPPKKKARLADDDLGVDDIFNTLTVPVTEDTEQIYTTKELLDVLGDSSDETPTKSNLKNGHLGSKTKIKTKIGSKYAYERQAMHKHNLKTKSKTKVKANDKKSKYSTKYSSFSNDLKDVSKSSFFAKRQMEKSLGIKKLKQDEVVPNKKADVKKKNSRLSSFDLAMLKRTVRQPIIALPKMTDLDIRACQESVDEIGNYISKSAQKSESFNSVSLDDSRFLPANYEDIDNEGVYDYMEDVFNQTDMNDLLTVRKDKSFVPAKPSKKAVKDEISKAVGGIHKAMGLDKKFSNLVRPAKKPRGRPPKKFLKLMNDEPIKKEADYDSHMTFLESVVKREPIDDEDDDYMPSKDNLDWMKNKKKGKYSCRMCSTSFTRLMQAVNHALCHQIPGKAIFPCILCAYAFTTYSELQKHMKNDHRKSKSPSMLPDGTPKPKGKPGRPKKGGVLTPTLIKPEIMDDEEVCDVEMLEEWLDEDDTLVDFENVTETEEFVELLKAESIELKDEVDEHIEAKEDAEDDDTKQVNKVEEIDFTVSGDEEWLLDEGEEEAARVSEDSDTVKESKSIQKRRGRKPKFRKFKCSTCLRCYDSHNTLRSHVCSGPKEKLRGTRGAYRCALCGQTFTTRRRLVYHRSFHQVELLERKMVCKDCPGRKFTSEAELFDHINNEHNVDFVCEEPGCTKQFHLRSALRAHSRTHGTKSYQCQECGKQFYDIHNLKEHNITHLTVKPFQCHICLKFLNRRSRLRMHLLAHVSCPVENCVLVCKCCKMAFKDAADAEVHILNAEDCRNYVLANENEELLSAFESSDDKKFIEIDIDDPPKISIRLETTVDDIVNETLADNEIVSMTTETTTLIQVKDENDENASEMLGGDDSMKALLAEVGAVKLMLTEDGTVGEILEDHSVAPDDNAPINEESRNRQSVKDLLEGVGTIKDLLENVDPMADQNVVNDSETSAMITELQNELLDSSNVIKDETGVKNMTLVRNSQIFTEDELMSQLSENSKLFIKVVKIKVVYRCEYCEKNYYTKDALNAHRLSHDGLRNPFICNVCKAAFSTFARCTSHKTTHGFYKLNIEEDKEKNPNDVTNHENFPVIKYFLCQHCSKTFLHWTYLQVHRRHKHSQNTYYFNCKICGDRFTDSWLLNSHRRKVHAESINCKKGANTSYKCADCGEGYNKRIELAKHRLEVHSDPSLIEQKNKPGPFACTSCDRMYQTKVGLDGHMRSHNGDIYVCDLCGNSFNHRTGLETHHKRVHLREQRYSCRTCDQNFFTSVDLENHKRCHSGEKPFPCEFCQMSFRTKGRRNEHHRTHTGERPYPCDICGVAFRRSNAMKNHRLIHTGEQRHNCPHCPKLFHVYTNLKSHIKAKHPEKCIILEIDGEPIDTLEESLKIITDADSAEVITGDLATNDAGNMLVLEDVIIEDESEAILRQDESANILEYTYETDINAHVQGSEMQCDTVEYVDGTIVDGKNSKVHIQLLDGSEHEQGLLYTVEDASMHLIEGEVRYALVDDINDDHKQQFTIIDEDHKQQFTIIDDNNKQQFTIIDDDHKQQFTIIDEDQEGDPKGDSVYYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -