Agra016234.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- ZFX
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000047.1:1913682-1919909[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0027 0.21 12.7 2.1 1 23 474 496 474 496 0.98 2 11 0.29 22 6.3 1.0 1 23 503 525 503 525 0.97 3 11 0.2 16 6.8 0.6 1 23 529 552 529 552 0.93 4 11 8.3e-06 0.00064 20.6 1.3 1 23 559 581 559 581 0.98 5 11 3.1e-05 0.0024 18.8 0.3 3 23 589 609 587 609 0.97 6 11 0.00027 0.021 15.9 1.6 1 23 615 637 615 637 0.98 7 11 1.4e-05 0.001 20.0 1.3 1 22 643 664 643 668 0.94 8 11 0.00089 0.069 14.2 0.2 3 23 678 699 676 699 0.94 9 11 3.6e-05 0.0028 18.6 0.5 1 23 705 728 705 728 0.98 10 11 6.1e-05 0.0048 17.9 0.4 1 23 737 759 737 759 0.98 11 11 3.2e-06 0.00025 21.9 1.5 1 23 765 788 765 788 0.97
Sequence Information
- Coding Sequence
- ATGAATGATGATTTGAACAATGAATCCAAGATAGATTGTAAAATTACCGATGATAGCTCAAATACTTTTACCTGTAACAGTACGGATTTCAATTGTCAATTTGACTATGAAGACACTATAACTCAATCGTCTGATATCGAAACTCAAACTGCTTTAGATGAGTTACTATATTCTAACACATCTAAATGCGATGATATTCAAGATATATTTTCAGAACTTATTAGCTTATCAGATATTCAGACTCAAACAACTTGGCCTTTAAATTACGCTGATAGTATATTAGAACCCGATGAACTGACTTGTGCAGAAAATAAGTCACATGGTTCTATGCTGATATCGACAGAAACGCAAACAACAGATGATATAGCACAGGATCAAAACAGTCTCGATTTCGCGACATCAAATTATGTATACGAAATGGATAAGAGTTCTCCATTTTTTGAAGGTACTTCAGCACATTTCTGTTTCAAAGAAACTCAAACATGTTTCTGTTTTTTGGATTCGCCCAAGTTTGAAGATTCATTGAATCATAAAATTATTCAAGATATATCCGGTTTAAACAGTCTTCCCACTGCAGTTTGTAACGAATGTTTCGTGTCTATtcacaaattttatttgttcaGGGAAAGAAGTAAAAAATCTCACAGTATCCTTGTTAATTATCTTAAAACTCTCAAAGCCAACGAAGcgattaattttgatattttgaaaagtgAACGAGATAAAATATTTCCACCCCTCACTCGTTCTAAAACTCTAGTCTTCGATGTAACGTGTTCAGAAAATCCAAATCGATGTAATTCAGATGAAGTTGAATCCATCAAAACAACTGGTGGATTGAATTACCAAAGTAACACAGTAAAAGATGAATGTtttgaagaaaatttaaatagtgAATCGGAATTTAAAAGAACCGAGTCTAGATCCAGTTCTTGTTCTAATAAGGTAGATATGAATCTCGGCAtggattttttatatgaattgcCTTTACAAGTACcagttaaaaaagaaaatgaatttgaaaatgAGATGCCAAATAACGACGAGAGAAAAAGGGAAGCTAAAGAAGTGGGAGAGCGAAAACGAGCATTAGATACGTCGTATCAAGAGAGTGAGAATGAGAATgatctttttgatttcggtgatgatgacTCGAGTATGGATGTACCGATAAAaactaagaaaataaaaaaatctcgagattcaaaacATAAAAAGAGAAAAGAAAAAGTGAAAACAAAAACTGATTCTACTCAAATTCAAATTGTGAATTCTACTCAAAATGTAATAAGTGATAAGAAACTGAGTAATCGAATGGTTCTTGAAACAGAACAATATAAGgtgataaaattaaatagagATCAAATTTTAGCCGAAATGGCAACAAATTCAAAAAGTAAACGATATTTGAATTCACCCCACAAGTGCACTCTTTGTGTGAAAGGATTTAATTATGAAGACGTTTTACAAAATCATATGACAAAACACGAACCTaaaagtaattattttgaatgtgatCTTTGTCATCAATTTTTGCCATCAGCAGTATCGATGCGAGGTCACAAAAAATCGCACAGTACCAAGTATCAATGTAAGATTTGTGACGTTATAAAGGCTTCTCGTCAACACCTGCTGGAACATTACATGTTGGTTCATGATGGTGCCCCgcgtacctatatatgtaatgtgTGTGGAAAAATGTTAACtAAAAGAACTATGTTTCAAAAACACATGAGAATACACTATCCTTCAAACAAAATAGCTTGTGATAAATgtggaaaattatttaaaaccaTTGAAACATTAAGAGCTCACATGctTCGACACACAGATGTAAAACCTTTTTCTTGTGATCAGTGTTTCAAAGCTTTCCGGTATGCGTCCTTACTATATACACACAAAATTACCCATCTTACCACTCGTAATTATTATTGTGTTGAATGTGATGTACGATTTAAAACACAGTCTAATCTGCGACTTCATTTGAGAAAATCTTTAAAACATGTCGACCCTGATTTGTTAAAGTTCGGATGTGATCAATGTGACCGACGGTATGAAGACGAAAAAAGTCTACGGCGTCACATAGAATGGGTTCATCTGCGTCAGAAAAATTATAAGTGCTCGAAATGTGAAATGCAATTCGGCTCTCCAGACGGACTACGTAGTCATATGAAGAAAATCCACGATGGCATTAGACCACCACCTAATCACGTCTGTAAAATATGCAATAGAGCCTTTAGGGCGAAGGCAGTGCTTGTAAAACACATAAGGGTGCACACCGGTGAAAGACCATATGAATGTCATGAGTGTGGGAAGAAATTTGCTCAAAATTCGACAATGTCCACTCACATAAAATTAGTACATTTAAAAATGCAACGGCAGGTCAACAGAAAAAAGTCAACGGATATTGTCCAGATAGAAAAAAAGCCACTTCAGGAAACTGTAGTGCCACCCACTTTTACTTACCATTCATCTCCTAGTGAGAATCCAGATTCTACTTATTTTTATGGAACCGGTTCAGCACAGTCAGCGCAAATAATGCGGCCTAATCCTGCTGCACCGTTTCCATAG
- Protein Sequence
- MNDDLNNESKIDCKITDDSSNTFTCNSTDFNCQFDYEDTITQSSDIETQTALDELLYSNTSKCDDIQDIFSELISLSDIQTQTTWPLNYADSILEPDELTCAENKSHGSMLISTETQTTDDIAQDQNSLDFATSNYVYEMDKSSPFFEGTSAHFCFKETQTCFCFLDSPKFEDSLNHKIIQDISGLNSLPTAVCNECFVSIHKFYLFRERSKKSHSILVNYLKTLKANEAINFDILKSERDKIFPPLTRSKTLVFDVTCSENPNRCNSDEVESIKTTGGLNYQSNTVKDECFEENLNSESEFKRTESRSSSCSNKVDMNLGMDFLYELPLQVPVKKENEFENEMPNNDERKREAKEVGERKRALDTSYQESENENDLFDFGDDDSSMDVPIKTKKIKKSRDSKHKKRKEKVKTKTDSTQIQIVNSTQNVISDKKLSNRMVLETEQYKVIKLNRDQILAEMATNSKSKRYLNSPHKCTLCVKGFNYEDVLQNHMTKHEPKSNYFECDLCHQFLPSAVSMRGHKKSHSTKYQCKICDVIKASRQHLLEHYMLVHDGAPRTYICNVCGKMLTKRTMFQKHMRIHYPSNKIACDKCGKLFKTIETLRAHMLRHTDVKPFSCDQCFKAFRYASLLYTHKITHLTTRNYYCVECDVRFKTQSNLRLHLRKSLKHVDPDLLKFGCDQCDRRYEDEKSLRRHIEWVHLRQKNYKCSKCEMQFGSPDGLRSHMKKIHDGIRPPPNHVCKICNRAFRAKAVLVKHIRVHTGERPYECHECGKKFAQNSTMSTHIKLVHLKMQRQVNRKKSTDIVQIEKKPLQETVVPPTFTYHSSPSENPDSTYFYGTGSAQSAQIMRPNPAAPFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -