Agra003639.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000010.1:19776837-19786947[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.1e-05 0.0032 18.5 0.7 1 23 270 292 270 292 0.99 2 10 3.3e-05 0.0025 18.8 5.9 1 23 304 326 304 326 0.99 3 10 1.8e-06 0.00014 22.7 0.8 1 23 332 354 332 354 0.98 4 10 0.00034 0.026 15.6 0.1 1 21 360 380 360 381 0.94 5 10 0.00019 0.014 16.4 2.4 1 23 498 520 498 520 0.98 6 10 6.6e-05 0.0051 17.8 1.5 1 23 526 548 526 548 0.98 7 10 6.9e-05 0.0053 17.7 2.0 1 23 554 576 554 576 0.99 8 10 3.3e-06 0.00025 21.9 0.8 1 23 582 604 582 604 0.99 9 10 7.4e-05 0.0057 17.6 0.6 1 23 610 632 610 632 0.99 10 10 0.23 18 6.6 0.2 2 17 639 654 638 655 0.93
Sequence Information
- Coding Sequence
- ATGGAGTGCAATTCGTCGCAGAGGGGATGCAACACAGGCCATGTCTACCTTTGCAGTGAAACAGAATTTACTGCCGTTGTATCACCCGGAAGGAAACCCAGCGAAGAGAAAGAACCGCGACCTAAAGGTTCAGCTCCCTATcccctACCTGGCCAGGGAGGCCGGGATTCCGGCACCGGTCGTGCCGAAGCGAAGAAGAGGGAGACCCCGCAAGCAGCGACTTGCGTAACCACAGGCAGCGATCTCTATCCAAGTTCAGAAGCGGGACGTCTTCCTCTGAACTCGAGAGGGGGAGGATGTAAAACTACGTTATCCTCATCGTCCCGTCAGTTGGCAGCAATGCCAATGTTTAGACTTTGTCTCCGTTCTGCTCCAGTTGAGTCCTCCGTCTCCATCCACGATTATCCTCATCCACTTGTTCAACGTATTTTGGCCTACTGTCAGCTACAAgttAACAGAGATGATTTGTTGCCAGATAAGATATGTCTTTTATGTAAAAACAATCTTGGATTGTTAAGCAATTTTAGGAACATGTGTATTCAGAATGAAGAAACACAGAAACTAAGACTGGCCGAGGTTTCAGATATCAAAACTGAAGAACTTATGTTGGACGATTTAAATTGGAAAGACGAGATCAGTATAAATTCTACATCGAAAGTCTGTCAACCAGCCGTTGAAGATAATATCAATGAATCAGAGTCAAGCAATTCGGGAAAACAGTCTTCTGCAGGAGATCATTCAAAGCAAAACGCCATATCAATAGAAAATGAAAACATACCTAGAGGAGAATTCACGCATGAAAATCAATACAGATGTGAAACTTGTTCTAAATTATTCACTGGCAAAGCTAGTCTCATTGAGCATATGAAATCTCACAAAGGGTTAAAACCTTACAATGGCGAAGCTAAGTTCAAATGCGAAATCTGTTTAAAGTCGTTCTCACACAAACATAACTTTCTAGGTCATATGAATACCCACAAAGGAATAAAACCGTACGAGTGCGAAGTTTGTTTGGTTTCGTTCACTCGTAGGTCTAACCTTAATAGACATACAAAAATTCACACCGAGGAGAGACAGTTCAAATGCGAAATCTGTTCTAAATCGTTCATTGGTAAAGCTAGCCTCGTCGAGCATgttAACAGAGATGATTTGTTGCCAGATACGATATGTCTTTTATGCAAAAACAATCTCGGGTTGTTGAGCAATTTCAGAAGCATTTGTATTCAGAGCGAAGAAACACAGAAACTACGGCTGACcgagattttaaatatcaaaaatgaaGAAACTATATTGGATGATTTAATTTGGGAGGATGAGATTGGTAATAATTCAACATCAAATGTCTGTAAACCAGGTGTTGACGATGAAATCAATGAATCAGAGTCAAGCAATTCGGGAAAACAGTTTTTGGAAGGAGATTATTCAAAGCAAAACGCCCtattaattgaaaatgataATATACTTGAAGGAAAATCCTCGCAGGAAAATCCACACAGATGTCAAATTTGTTCTATATTGTTCACTACTAAAACTAGCCTCATGGAGCATATGAATTCTCACACAGGGATAAAACCATACCGATGCAAAGTTTGTTTGATTTCGTTTGCTCATAGATCTTCCTTAAGTAGACATGCTATAACTCACACCAAGGAGAAACGGTTCAAATGCGAAATCTGTTTAAAATCGTTCGCAATCAAACATAACTTTCTGGTTCATATGAATTCCCACAAAGGAATTAAACCGTACGAATGCGAcgtttgtttgatttcattcacaTACAGGTCTAACCTTAATAGACATGCTAAAACTCACACCGAGGAGAGACGGTTCAAATGCGAAATGTGTTCTAAATTGTTCACTGCTAAAGATAGCCTCGTGGAGCATATGAATTCTCACAAAGAGATAAAACCAAACCAATGTGGAGTTTGTTTGATGTCATTCACTCATAGGTCTACCTTAAATGAGGATATGGTGGATAACTTGGATGACTTAATTCTCCAATTGAATAATTCTTCAGACGAAGAAGAGACTGATGATGACGACCAACCACCACCACCCAAAACGCAGTCGGAATGA
- Protein Sequence
- MECNSSQRGCNTGHVYLCSETEFTAVVSPGRKPSEEKEPRPKGSAPYPLPGQGGRDSGTGRAEAKKRETPQAATCVTTGSDLYPSSEAGRLPLNSRGGGCKTTLSSSSRQLAAMPMFRLCLRSAPVESSVSIHDYPHPLVQRILAYCQLQVNRDDLLPDKICLLCKNNLGLLSNFRNMCIQNEETQKLRLAEVSDIKTEELMLDDLNWKDEISINSTSKVCQPAVEDNINESESSNSGKQSSAGDHSKQNAISIENENIPRGEFTHENQYRCETCSKLFTGKASLIEHMKSHKGLKPYNGEAKFKCEICLKSFSHKHNFLGHMNTHKGIKPYECEVCLVSFTRRSNLNRHTKIHTEERQFKCEICSKSFIGKASLVEHVNRDDLLPDTICLLCKNNLGLLSNFRSICIQSEETQKLRLTEILNIKNEETILDDLIWEDEIGNNSTSNVCKPGVDDEINESESSNSGKQFLEGDYSKQNALLIENDNILEGKSSQENPHRCQICSILFTTKTSLMEHMNSHTGIKPYRCKVCLISFAHRSSLSRHAITHTKEKRFKCEICLKSFAIKHNFLVHMNSHKGIKPYECDVCLISFTYRSNLNRHAKTHTEERRFKCEMCSKLFTAKDSLVEHMNSHKEIKPNQCGVCLMSFTHRSTLNEDMVDNLDDLILQLNNSSDEEETDDDDQPPPPKTQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -