Agra004342.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- Zfy2
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000012.1:6061188-6071046[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.14 11 7.4 3.5 2 23 56 77 55 78 0.95 2 13 0.00029 0.023 15.8 0.1 1 23 85 107 85 107 0.95 3 13 0.19 15 6.9 1.6 3 23 114 140 112 140 0.87 4 13 5.1e-05 0.0039 18.2 0.5 3 23 162 182 161 182 0.97 5 13 1e-06 7.8e-05 23.5 1.8 1 23 188 210 188 210 0.98 6 13 7e-05 0.0054 17.7 1.7 1 23 216 239 216 239 0.96 7 13 0.014 1.1 10.5 1.6 3 23 250 271 248 271 0.96 8 13 0.00039 0.03 15.4 3.1 1 23 353 375 353 375 0.96 9 13 1.7e-07 1.3e-05 25.9 4.3 1 23 381 404 381 404 0.98 10 13 1e-05 0.00079 20.3 1.2 3 23 708 728 707 728 0.97 11 13 0.0077 0.59 11.3 5.2 1 23 734 756 734 756 0.99 12 13 1.7e-05 0.0013 19.7 0.8 1 23 764 786 764 786 0.97 13 13 0.2 16 6.8 3.0 1 23 792 814 792 814 0.96
Sequence Information
- Coding Sequence
- ATGTGGGAAGACGCGAATATAAATGAGACGATCGCTTGTTCAGAGGGGAGTGAAATTGGGGGTGACGATGGACTCGAAGCCATCCAGGGGCCCCAGAAGAGGGGCCGCGCCCCTGGTCGCCCTCCAAAAGATGGCAGATCCGTTCTTCCAAAGATCACAATGTCAAAATGCGAGTATTGCGAATCGGTGTGCAGAACAGGAAATATGCTACAACGTCATGTTATTAAACATCATCCCGACAAACGGAATACATTCCCGTGCACACTATGCGCACTCTCTTTTTCATCCAAGGATGAATTGTTGCGACACGTATTGGATCATTGGGAAGTTGGAACAACGTGTCCTCTCTCGGATGATTGTAAttgcaaattgaaatttactAGGCGCGCTGTGCTAATGTCACATTTATTGAAGAAGCATCAGGTTACCGAAGTATTCCGATTGGTTCCtaaaaaatatgtcaaaaacaagAAAAATCCCATATGCATGTTTTGTTCTAAAACATTCCCGAAGTTAAGTTTACTTGAAAGGCACATCAGAGTTCACACAGGAGAGAAACCTTTTGTGTGTAATCATTGTGGTACTGGATTTAGTCAAAAATCTACTCTGAAccttcacattttaaaacatacaaATGACCGACCTCACAAGTGTTCCCGATGTCCGGCTTCGTTTAATCAACGGGgtaATTTAAAAGTACATCTAAAGTTATCACATCCATCTGTGATTCCACAGGATGCCATCAACTGCCCTTATTGTTCATCCATTTTCCGACACAAACAGTTTATGGAAgctcatataaataaatttcacaagaatTTGACCGACGATCAGATGATTTCCGacacaattaatgacgtcatgAAAAGTCTAGCAAATCTGAATGAAAATTCACAGACTGATATTGAGATGATACAGAATGCTCTATTTCCAGACGATTCTTCTTCTAAATTAGATCTCTTAACGAGCAAAGATTTGTGTCTAACTTCACAAAAATCTCCTTCAAACATTTTCTTGACAAATGATGACAGTAAAAATAAACCAACGAGGAAAACCTATCACTGCAATTCATGtccaaaagtttttaaaaagaaCACAGATTTACTAAGACACTTCTCTATACATCTCAATCTCAAACCATATAAGtgtAACATATGTGATAAGAGTTTTCGTCAATCTTCTCATCTTTATGTTCATCAAAAAAAGTTACATAAAATaagaacaaatcatgaaaaaatagataaagacAACACGGATAAGACTGACTATTCTCAATTAGTTATCAATGGAATCAATAAGGAAGACCACACGAGTCCTATAAAATCATTTCCAAATTTATCATTGGAAAATATCAACAGCGATGATAACTTGAGTTTCCAATTACTGTCAACGGAATCGATGGTCGACCAGAGCAACATTGACACTGATATTTCCTCACTATGCAACAGTTCAGTCTTGAATAGCACCAGTTTTAACAATGCAGATTCCGTTCTCAATTTCAGCATAGAGAATATTTATATAGACCCAAATTATTTTCCGACGATCACCAACACTGATCAGCTGAACGTTACGAATGAACAACAAATAGCACCGTTTGAAAACAATATCCTGGAACACAACAAAATTACACCCAACGAAACTCATCCACTAGATAATGtgtatttagaaaatattttagtCGACATCAACGGAGAGCACAACATAATCGATGACAATTCAACGAATACGTTAACAAACAATCCAAGTTTCATAATAGATGGTGTCATCGATTATGAAATGGGCattgataattttaatgaatCTAATATTGAAAAAGAGAACGAGTTGCAAAATAACGTTCAAATCGTATCCATGTCACTACCGAATTTAAGCGAGGAAAGTGCTCAAGCATTCACACCGACTGTTGATAACGTTCTTATTAATTCCAACAATCAAATCACCGATGTTGATATTCTgaAATTTGTCGACCAAAATGTGAATCAAAGTGATGCAAATATTGACAAacgaacgaagaataaaaaaaactctgAATCAACTATAATGAAGAACGAATTGAAAATGTTCAAGgaaATCTTGAAAATCAGCAAGCAAAAGTATAAAGACCCACCGTTGAGCAATTGTTGCGAGTTTTGTCCGGCCAGCTTCCGCAAACCTTCGGATCTCGTCCGACACATTAGGACTCACACTAAAGAAAAACCGTTCACGTGCGAGATCTGCAAAAATAGTTTCGGCTTCAAGTCGACGTTGAAATGTCACATGCGTCGACATTTTTCAGACGAACGGCAAAAATACTCATGCCAAgtCTGTGGAAAAAAGTTTTCTACAACAAGTGCCTTATCATTACATAAAAGCGTACACATCGGAAAAAGACCTCATTCTTGTCCGATATGTTTCATCAACTTCAGAACAACTGGACATAGGGACACTCATTTAGAATCTCATTTCAGAATAAAAGataaAACAAAACCTCAAACTGAAATTCAAACATTCCAATTGTGa
- Protein Sequence
- MWEDANINETIACSEGSEIGGDDGLEAIQGPQKRGRAPGRPPKDGRSVLPKITMSKCEYCESVCRTGNMLQRHVIKHHPDKRNTFPCTLCALSFSSKDELLRHVLDHWEVGTTCPLSDDCNCKLKFTRRAVLMSHLLKKHQVTEVFRLVPKKYVKNKKNPICMFCSKTFPKLSLLERHIRVHTGEKPFVCNHCGTGFSQKSTLNLHILKHTNDRPHKCSRCPASFNQRGNLKVHLKLSHPSVIPQDAINCPYCSSIFRHKQFMEAHINKFHKNLTDDQMISDTINDVMKSLANLNENSQTDIEMIQNALFPDDSSSKLDLLTSKDLCLTSQKSPSNIFLTNDDSKNKPTRKTYHCNSCPKVFKKNTDLLRHFSIHLNLKPYKCNICDKSFRQSSHLYVHQKKLHKIRTNHEKIDKDNTDKTDYSQLVINGINKEDHTSPIKSFPNLSLENINSDDNLSFQLLSTESMVDQSNIDTDISSLCNSSVLNSTSFNNADSVLNFSIENIYIDPNYFPTITNTDQLNVTNEQQIAPFENNILEHNKITPNETHPLDNVYLENILVDINGEHNIIDDNSTNTLTNNPSFIIDGVIDYEMGIDNFNESNIEKENELQNNVQIVSMSLPNLSEESAQAFTPTVDNVLINSNNQITDVDILKFVDQNVNQSDANIDKRTKNKKNSESTIMKNELKMFKEILKISKQKYKDPPLSNCCEFCPASFRKPSDLVRHIRTHTKEKPFTCEICKNSFGFKSTLKCHMRRHFSDERQKYSCQVCGKKFSTTSALSLHKSVHIGKRPHSCPICFINFRTTGHRDTHLESHFRIKDKTKPQTEIQTFQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -