Agra016167.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000047.1:661013-667077[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.2e-06 0.00063 20.7 1.3 1 23 511 534 511 534 0.96 2 11 0.0003 0.024 15.7 1.9 1 23 540 562 540 562 0.97 3 11 0.00029 0.023 15.8 4.8 1 23 568 590 568 590 0.98 4 11 5.3e-05 0.0041 18.1 1.7 1 23 597 619 597 619 0.99 5 11 4.8e-06 0.00037 21.4 0.2 1 23 625 647 625 647 0.94 6 11 8.2e-06 0.00063 20.7 0.6 1 23 653 675 653 675 0.99 7 11 4.1e-07 3.2e-05 24.7 0.3 1 23 681 704 681 704 0.96 8 11 0.00015 0.011 16.7 6.4 1 23 710 733 710 733 0.96 9 11 8.2e-06 0.00064 20.6 2.2 1 23 739 761 739 761 0.98 10 11 0.0001 0.0078 17.2 1.1 1 23 767 789 767 789 0.97 11 11 0.0013 0.098 13.8 0.2 1 23 795 819 795 819 0.93
Sequence Information
- Coding Sequence
- ATGGATGCTGAAGAAAATCCGCACTGTTTTGTGTGTAACAGTCGAGTTGGAGTTTCAGTCAGGAATGCAGTTGAAATATTTCACGATCAGaatAAATTGCCAACATCTAATAAAACAATAGCTCTCTGTATTGGCGATATTATTGGTAAAAAACTTGATAAAGAAAGTGTCCACTCTTTAATTGCATGTAAAAAGTGCTACAAACTCTTGCGAGAGTATGATGAGTTGGAGTTCAGagTAAATGAAATCAAAGCGGAAGTTCTCAATCACTTTAGAAATACAGTAGAGAAAAATAATTTGGACCGTGAATCATATACCAATTTAGAGATGGATTCTCATGTGAATGCAAAAGTTGTGAATAAtgaaagtattaaaattaaagaagAATTCATTTCAACGGACGATTCAAATTCTACTGAATGGATAAAGTCATCTAAATTttcggaaattaaaaaaatagcaccTATGCCAGCTAATCTTGTAATTGTTGGACACAAAGGGAAAAAGATTACCATTCAAAAACcagcaataaaaattccaataaatGCATCAAAACTCCCTAATTCGATAGATACTACAGAAGAAGAAAAACACCAGGTGGATCCTGTCGAACTACAAATGCAGCAACTACACCAAGCTGAAGGTGATTCTGATAAAAATAGCGAATGCGATAACTCTTTAGAtaatacaaatcaaattaaaatatcaaatcaacAAGACGTTGaggaaataaaaactaaaattgaAGAATGTGAAAAAAGTGGAGTCACAGAATATCTAAGTGAATATGATGGCATAATCGTTAAAACTGAGGAAACTTCAACGGAGGAACAGCAAAATGATGATAAATATGTCATAAGTGAACTGGAAATAGTGGATAATAGTAGTTCTGATATGCTATTAGAAGATGGAACAATACTAATGGAACAGACCGAAGATGGTAATATTATAAAAGTTGTACATCATGcgggaaaaaatataatacaagatGATCAAGGGAATATATACAGGACTGATGAAGATGGAAATATAGAGGTGATTCTACCAGACCAAGACAATGACGACGATGATATTGTTCACTATGAAACAATAAATTTGAAAGatggcggtagtattataaaatttagtcccGGTGTTTTTAATAgggaaatgtttaaaaataagaaGATCAATGGCATCTTAGGCTTAGAAGATGAAGACGATAAAGATGATTCTGCAGATAATTTAGAAATGGATACTGATCCATCTAACCCAACTGCCATGAAAGCAGCAGAAAACTTATATTCTTGTTTAATGTGTGACTCGACAGTAGGAGACAAAAGTAAAGAGGAAAATATTAAGAAAGAAGACAATCCTAGTGAAATGGaTGAAGAAAATTCTATTCGCCTTTGTGACGCAAACATGATAAGGGAACACATGAAAACTGTgcataatacaaaaatttatatctGTTCACCGTGCggagatgtgcacacgacaaaGGACAGCATACTTGAACACTTGTCGCAACACGTGTCTAAAAAAGGTGAATACCAATGCGATATATGCAGCAAAGTATACGAGTCTCAAACCCTTTTAAGAAAACATCAGAGGTTTCTACATTGGCGGTCGAAGAATTACcattgcaatatttgcaataAGAAGTTtgggtCAAAAAATCTTTTGGAAGAGCATAGCAATATTCACAAAGGTCTAAAACCTTACAATTGTGATATGTGTGGAAAGAATTTTTCTTCTAAGTATACTCACCAATCTCATATGAAAACTCATATGGATAGACCACGGCCTTATACTTGCTCTCAGTGTGGAAAATCATTCCTCACATTACAAAATTTAACCCAACACGAGAAAACCCACTTAGGAATCAAGGATTATGTTTGTAAAATTTGCGGCAAAGCTTTTGGTACACAACACAATTTAGAAGTTCACGGTGTTGTGCACACCGGATTCAAACCGTATAAGTGCAAAACGTGCGGTAAAGGCTTTGCACGTAGGGCCGAAATACGCGATCACGAAAGGACGCATACTGGTGAGCGGCCGTACGTGTGTGATATATGCGGTGCAAGCTTTTCTCAGCGCAGCAATCTCCAGTCGCATAAGAGGGCTACACATTTTGACGACAAGCGGTATAAATGCCATTTATGTGAAAAGTGTTTCAAGCGGAGACGATTGCTGGAGTATCACATAAAGGCAACACATACTGGAGAGCGACCGTTCCGTTGTCAAGTTTGCGATGCTACGTTTGTTTATCCCGAACATTTCAAAAAGCATCAAAGGATACACAGTGGAGAAAAACCTTATAAATGCGAAgTGTGTCAAAAGGCTTTTAATTCGCGTGACAATAGAAATGCCCACAGATTTGTACATTCCGATAAAAAGCCGTATGAATGTTTGGATTGTGGTGCTGGTTTTATGCGAAAACCTATGCTCTATGCTCATATGCATACacagGGACATTTGAGTGATACTATTGTAGTAAATCAACCAAGACTGGGTGGGGACACGGAAACCTCTTCATTTGACGGTAGAAATACATTTGTCATAGAAAATGGACAAGAAGAAATCAGCACTAAAGTGAAAAAAGAAGACTCTTCGAATGACTTTAAACAGAATATTCCAATATTAGTCAATGCCGCTGATGAATCTCACGATGGAACAGcaaTAATAACCAAAACAGAAGTAGAAATAATGCCGGACGAAGAAACTTACTTGGAGAGTACCGAAGGCGTTATCGATGAAGATATGTTGGACCCCCAAAGAATAGAAATAATTGATGGTGATAATACACACGAAGTTAGTGAGGTGCTGGTTGGTGAAGATGGAACTTTGCGATTGGTGCAAATACAACTATCCGATGGTGAAAATGCATGGGTTGCCTTGAATGATTAA
- Protein Sequence
- MDAEENPHCFVCNSRVGVSVRNAVEIFHDQNKLPTSNKTIALCIGDIIGKKLDKESVHSLIACKKCYKLLREYDELEFRVNEIKAEVLNHFRNTVEKNNLDRESYTNLEMDSHVNAKVVNNESIKIKEEFISTDDSNSTEWIKSSKFSEIKKIAPMPANLVIVGHKGKKITIQKPAIKIPINASKLPNSIDTTEEEKHQVDPVELQMQQLHQAEGDSDKNSECDNSLDNTNQIKISNQQDVEEIKTKIEECEKSGVTEYLSEYDGIIVKTEETSTEEQQNDDKYVISELEIVDNSSSDMLLEDGTILMEQTEDGNIIKVVHHAGKNIIQDDQGNIYRTDEDGNIEVILPDQDNDDDDIVHYETINLKDGGSIIKFSPGVFNREMFKNKKINGILGLEDEDDKDDSADNLEMDTDPSNPTAMKAAENLYSCLMCDSTVGDKSKEENIKKEDNPSEMDEENSIRLCDANMIREHMKTVHNTKIYICSPCGDVHTTKDSILEHLSQHVSKKGEYQCDICSKVYESQTLLRKHQRFLHWRSKNYHCNICNKKFGSKNLLEEHSNIHKGLKPYNCDMCGKNFSSKYTHQSHMKTHMDRPRPYTCSQCGKSFLTLQNLTQHEKTHLGIKDYVCKICGKAFGTQHNLEVHGVVHTGFKPYKCKTCGKGFARRAEIRDHERTHTGERPYVCDICGASFSQRSNLQSHKRATHFDDKRYKCHLCEKCFKRRRLLEYHIKATHTGERPFRCQVCDATFVYPEHFKKHQRIHSGEKPYKCEVCQKAFNSRDNRNAHRFVHSDKKPYECLDCGAGFMRKPMLYAHMHTQGHLSDTIVVNQPRLGGDTETSSFDGRNTFVIENGQEEISTKVKKEDSSNDFKQNIPILVNAADESHDGTAIITKTEVEIMPDEETYLESTEGVIDEDMLDPQRIEIIDGDNTHEVSEVLVGEDGTLRLVQIQLSDGENAWVALND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -