Agra009904.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- Sall1
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000023.1:5038721-5040001[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00035 0.027 15.5 0.2 2 23 114 135 113 135 0.97 2 11 3.7e-05 0.0029 18.6 2.5 1 23 141 164 141 164 0.98 3 11 2.5e-06 0.00019 22.3 0.3 1 23 171 193 171 193 0.98 4 11 9.5e-06 0.00074 20.4 8.6 1 23 199 221 199 221 0.99 5 11 1.7e-06 0.00013 22.8 0.3 1 23 227 249 227 249 0.97 6 11 2.4e-05 0.0018 19.2 0.1 1 23 255 277 255 277 0.97 7 11 2.8e-05 0.0021 19.0 0.6 2 23 284 306 282 306 0.96 8 11 0.11 8.5 7.7 2.4 3 23 313 330 311 330 0.72 9 11 3e-06 0.00023 22.0 4.9 1 23 336 358 336 358 0.98 10 11 3.3 2.6e+02 3.0 2.2 1 23 364 389 364 389 0.85 11 11 5.2e-05 0.004 18.1 0.7 1 23 395 418 395 418 0.97
Sequence Information
- Coding Sequence
- ATGAAGTGTAGGGTCTGTTTGGCAGGATCCGGTAGTGTGTCATTATGGGGGTCACTCCCATTAGCGGTGCGCCTACGACGATGTACTGGTGTGAGGATCAATCCAGAAGATGGACTACCAAACTGGTTATGTCAAGAATGTGCAGACGCTTTGACGGCCGCCTATCGCTTCAGAGTAACCGCACGAAGAACTGACAAACTTCTAAGAAACACACACCACATATCACCAGTCAAAAGTGAGCCCAACTCACCAGAACCCACACATGAAGATGACAACTCTTTAGACTATTCTGATACTAAAGACGATACAGCACCACAAGAAGAAAAGTATGATACTTTAGAATGTTCGGAATGCGGATTGAAAGTAAAAAGTAAATCGGCAATGataatacatttgaaaaaacACACTGTTGAAAAACCGTTCAAATGCCCTTCGTGCGATAAAAGCTTCTGTGTAAAAGGAACAATGTTGAATCATATAAAGCGCTTACATTCATCCAATGAAAGGAGATTCACCTGCGAAATATGTGGTAAGCAATTCATTCGAAAGAAAGACGTGATGATCCACGTGAGGGTTCACACCGGAGAGACACCGTACTCTTGCAAATACTGTCAGAAAAAATTCTCACAGCACGCTACGCTTACTAGGCACCATCGCACTCATACTGGCGAGAAACCATTCCCTTGCTCGGTTTGTGGAAAGAAATTCGCCGATAGATCAATGCTACGTACGCACAGCATGGTACACGACAACGAACGAAAGTTCATGTGCAACATATGCGGAAAAGCGGTCAAGTCTAACAACTCGCTCGTAGCTCACGTGAAATTGCATACGAATAGGAAGTGCAACGTGTGCGATTTGTGCGGAATTGCTTTCGCTACCAAGGGCAATCTAAAGCTGCACACGAACAAAGTGCACTCGTCCATGTCGGGACATTGTTCAATTTGCTCGAAGGACTTCTCCCGGTTGGAAGATCACATGAGGAAACACACTGGCGAGACTCCTTTCAAGTGCCACATGTGCGGTAGATGTTTCATGCAGAAGAGCAGTCTGGCAATACACATGTCGAATCATCAGAATGCTGGCAAGCATGCGTGCACTGCCGATGGGTGTACTAAAACGTTCCACATAAAGAGTATGTTGGACTTTCACATATTGAAATATCATAAGCATCATAAGCCATTCTCTTGCGAGGTGTGCAACAGGGGATTTTTCAGAGGAAGCGATCTGTCTAGACATTTAAGACTCAGCCATCAAGACGGTGtcaagaaagaaaaataa
- Protein Sequence
- MKCRVCLAGSGSVSLWGSLPLAVRLRRCTGVRINPEDGLPNWLCQECADALTAAYRFRVTARRTDKLLRNTHHISPVKSEPNSPEPTHEDDNSLDYSDTKDDTAPQEEKYDTLECSECGLKVKSKSAMIIHLKKHTVEKPFKCPSCDKSFCVKGTMLNHIKRLHSSNERRFTCEICGKQFIRKKDVMIHVRVHTGETPYSCKYCQKKFSQHATLTRHHRTHTGEKPFPCSVCGKKFADRSMLRTHSMVHDNERKFMCNICGKAVKSNNSLVAHVKLHTNRKCNVCDLCGIAFATKGNLKLHTNKVHSSMSGHCSICSKDFSRLEDHMRKHTGETPFKCHMCGRCFMQKSSLAIHMSNHQNAGKHACTADGCTKTFHIKSMLDFHILKYHKHHKPFSCEVCNRGFFRGSDLSRHLRLSHQDGVKKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -