Agra017987.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000065.1:2726514-2743682[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00014 0.011 16.7 0.5 1 23 752 774 752 774 0.99 2 13 3.4e-05 0.0026 18.7 3.0 1 23 780 802 780 802 0.97 3 13 7.7e-05 0.0059 17.6 1.9 1 23 808 830 808 830 0.97 4 13 0.0079 0.61 11.3 5.6 1 23 836 858 836 858 0.98 5 13 6e-05 0.0047 17.9 0.7 1 23 864 886 864 886 0.97 6 13 1.2e-05 0.00095 20.1 1.0 1 23 892 914 892 914 0.99 7 13 0.0004 0.031 15.4 7.9 1 23 919 941 919 942 0.95 8 13 0.029 2.2 9.5 3.5 1 23 947 969 947 969 0.98 9 13 1.8e-05 0.0014 19.5 3.6 1 23 975 997 975 997 0.99 10 13 3.5e-05 0.0027 18.6 1.7 1 23 1003 1025 1003 1025 0.97 11 13 0.00011 0.0083 17.1 2.1 1 23 1031 1053 1031 1053 0.99 12 13 0.0067 0.52 11.5 1.3 1 23 1063 1085 1063 1085 0.96 13 13 1e-05 0.00081 20.3 4.0 1 23 1091 1113 1091 1113 0.98
Sequence Information
- Coding Sequence
- ATGGGataCAAAAGTGACAATAGAAATAAATCTTGGGCGTCTCAAGCAAAAACTAAATACTCTCCACTAAATGTTTCAAAAGCCGTATTATCAGTTGGatctgatattaaaaaaattgaaagtaaACAAATTCAGAATGCTACGTATGTTGCTACTCCAGTCGATGCCCCTCAACAAATTGAAATAAACGATACATACGAGGAAAGTAGTAAATCGAAGGATGACCTTGTAATATCAGGCACTCCGAAAAAGTCTGTGCCGTTACAATCTTCTGACGATCTTTTTGAAGATTTGGATGTTAGTCGTATTTCTGCAACTATGGAAGAAAAACAGCCCAGTGATGAGACTATTCAAAAACCAGTTAAAGAGCCGACGGTTCCAAAAGATCCAGTCGTTGCAAAACCTCTCAAGCAATTTGATTCGAGACTATTCGGATTTTCTTCCGATGAATTGTTCAAAAATGATCCGGAATCATCTCCCTTATATtggaaattgaaatattattttgataaacagaaAGGAAAAGACATATTCAAAAAAAGTAATAATGCTGACGAGCAGAATGCAAAAGTAGAAAATAGTTTGCGCAAGAATCATTGCAAGATATCTATTTTCAAACATGGCCGAGATGTTATTGATGATGTGTACGTTATGGACACGCAGAAAGCCGATATGCTTATAGATGTGTTTAAAAAGAAGCCCATTAAaggcgatgatgatgatgtaaaaGATGTGCCTGAAAATAGTGTTGAAAATTATTCGCTTATGTGTAATGAAGATAAGTGCAATACAGAAATAGCCGATATTGAAGAATCTATATTTGAGGCTATACATTGTACAAAGACTGAAGGAAATCTTGACGATGACAGACAGATTTTTAGCACTTTCGAATTGGAAATGATTTTGAGTAATAATGACAATCCTAATAATAACACTAACAAAactgaaaatatagtaaaagtGGATGAAAACATTGTCACAAAAGATCAGTCAGTTGAAGATACATCAAAGAATGTGGAGCTAGATAGtggAACGCCTGTTAAAAAGACCAAGAACAATGTGTCGTTTTCTCCGATTCAAACAGTAGTTTACTTCGAATCCAAGCAATCTGGTACCGTGTTGTCGAAAACCGTATCTTCCGAAGAAATCGAAAAATCAGTTTCGAAATCCCAAAAGCGACTTAGTGAAGTGAATAATTTagCAATCAATTTTAAAGAGGGGTATTTTAGCGATACCCCTTTGCCAAAAAGAAGAAGAGGAGCATTATACCAAGAGTCGGCTGTCGACAATGAACCCAAAAGATTGAGAACGAGATCCAATAGAGACCTTACATTATCTCTCACTAAAACTTCAAAATCTCCGAATAGAGCTCCATTGTCGAATTCCAAAATGGTTGAGAAAGAATCCAGAGGGGATTTGTTGAAAGTCTTAAAGAAATCTAAAGTTATAGGTTCCAGTGAcctagaaaatttaaatttagatgaTATGTGCCTTCCCATGTCTCCTCCTCAATATGAAGAATGTGCAGAAATCGGAAAAATATCGAATTCCATGATTGACGGGGAATGTCAAACTAACACGAACGATTCTCTTGCTGGCATTCAGTTGAACATTAGCAGTTTTTCGAAAATATGTGTAGCAAACGGGGATGATACAATGTTTCAGTTTGATGATGAGATCCAAGTGCGAAAAGATGTTTTGTCCAGAAATGTTACCTCTGTAGATGATATTCCAGATGTCGATATGACGCCTGCGTGCGATTTCGAAATGTTGAAAGAATTTGTAAAAGTTCCAGTGGAAACTTCCGTCTCCATTTATGACGATCCTCATCCATTGGATcaacgcatttggacctgctgtcagctgAAAGTTAGGAAAGCTGATGAGATGCCAGATATGATATGCTTTTCTTGTAATAGTAATCTGAAATTGTTGGACAATTTTAGAAAGATTTGCTTTCAAAGCGACGAATCGCAGAAACTGAGATTAGACAAGTGTTTGGATATAAAAACAGAGGaaattttattgaatgatttaaaatggGAAGATGAATTAGGCACTGATTCGCTACATAACTGTTCTAATTCTCCGGTTAATGATGCTTTCATCAATGAAAGCGATTCAAAAGAAACTATGCATTTAATTGAAGACGAAAATAATGGCGAAAATTCATCGATTGGTAAAAGAAAAGTTGTCTTGTGTTATAACAAAGCAAAAGTGATGAAAGTTTCATCAAAGAACAGttcaaatcattataaatgtgatgtttgtatgaaatcgTATGTCTCTAAATCCAAATTAGTAGTTCATATAAATTCTCACAGCCGGAAACAGCCGCACAGTTGTAATATTTGTTTGAAGACATTCACTAGGAAGTCTAACTTTGTCGGCCATATGAATTTGCACAACGGGGTTAAACCGCACAAGTGTGAGATTTGTTCGAAGGAATTCACTCTTCAATCTACCCTCATAGCACATCTGAAATTCCATGCCGGGAAAAAACCCTACAAATGTGATACttgtttgaaattattcacaaaaaaatgcCACCTAGTAGTGCATATGAATTTACACAGTGGCTTAAAACCGTATAGTTGTGAAATTTGCTTGAAGTCGTTCACTAGAAAAGCCAACTATACGGGACATGTGAATTTACACAACGGAAtaaaaccgttcaaatgtgaaATCTGTTCTAAAGAATTCACTAAAAAATCTGCCGTAGTGAGCCATATGAAGTCTCACTCCCCTAAACCACACGAATGTAACACTTGCTTAAAGACGTTTGTTACCAAATATCACCTTATGAGACATGTGAAATCTCACCATatgataaaaccatacaaatgcgaAATCTGTTCAAGACAATTCAGTATTAAAATTTGCTTCGATAGGCATGTGAAATCCCACACTAGGATAAAAGCATATACTTGTGAAATATGTTCTAAATTATTCACTAGAAAATTCCACCTGTCGGTGCATATGAACTCCCACAatggaataaaaccacacagCTGTGATCTTTGCTTGAAATCGTTCACTAGCAAGTCCAACCTGATGGGACACCTGAATGTTCACAACGGGgtgaaaccatacaaatgtgatatctGTTACAGCACATTTTCTTTGAAATCTACCCTCGATAGACATATGAAATCTCACACGGTGACCGTACCACATATGAAATCTTACAATTGTGACGTTTGCTTCAAATCGTTCACTAATAAATTTGTTTTCGACGAACATGTGATGTCTCATACTGGAATAAAACCGCACAAATGTACAGTTTGCCTTAAATCATTTACTAGGAAAGCTCAGATGTTACGACACATGAATACTCACAAAGAGGTAAAACCACACGAATAA
- Protein Sequence
- MGYKSDNRNKSWASQAKTKYSPLNVSKAVLSVGSDIKKIESKQIQNATYVATPVDAPQQIEINDTYEESSKSKDDLVISGTPKKSVPLQSSDDLFEDLDVSRISATMEEKQPSDETIQKPVKEPTVPKDPVVAKPLKQFDSRLFGFSSDELFKNDPESSPLYWKLKYYFDKQKGKDIFKKSNNADEQNAKVENSLRKNHCKISIFKHGRDVIDDVYVMDTQKADMLIDVFKKKPIKGDDDDVKDVPENSVENYSLMCNEDKCNTEIADIEESIFEAIHCTKTEGNLDDDRQIFSTFELEMILSNNDNPNNNTNKTENIVKVDENIVTKDQSVEDTSKNVELDSGTPVKKTKNNVSFSPIQTVVYFESKQSGTVLSKTVSSEEIEKSVSKSQKRLSEVNNLAINFKEGYFSDTPLPKRRRGALYQESAVDNEPKRLRTRSNRDLTLSLTKTSKSPNRAPLSNSKMVEKESRGDLLKVLKKSKVIGSSDLENLNLDDMCLPMSPPQYEECAEIGKISNSMIDGECQTNTNDSLAGIQLNISSFSKICVANGDDTMFQFDDEIQVRKDVLSRNVTSVDDIPDVDMTPACDFEMLKEFVKVPVETSVSIYDDPHPLDQRIWTCCQLKVRKADEMPDMICFSCNSNLKLLDNFRKICFQSDESQKLRLDKCLDIKTEEILLNDLKWEDELGTDSLHNCSNSPVNDAFINESDSKETMHLIEDENNGENSSIGKRKVVLCYNKAKVMKVSSKNSSNHYKCDVCMKSYVSKSKLVVHINSHSRKQPHSCNICLKTFTRKSNFVGHMNLHNGVKPHKCEICSKEFTLQSTLIAHLKFHAGKKPYKCDTCLKLFTKKCHLVVHMNLHSGLKPYSCEICLKSFTRKANYTGHVNLHNGIKPFKCEICSKEFTKKSAVVSHMKSHSPKPHECNTCLKTFVTKYHLMRHVKSHHMIKPYKCEICSRQFSIKICFDRHVKSHTRIKAYTCEICSKLFTRKFHLSVHMNSHNGIKPHSCDLCLKSFTSKSNLMGHLNVHNGVKPYKCDICYSTFSLKSTLDRHMKSHTVTVPHMKSYNCDVCFKSFTNKFVFDEHVMSHTGIKPHKCTVCLKSFTRKAQMLRHMNTHKEVKPHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -