Basic Information

Insect: Arctopsyche grandis
Gene Symbol: -
Assembly: GCA_029955255.1
Location: JARCGT010000018.1:4895497-4901296[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.8e-06 0.00061 20.7 4.7 1 23 163 185 163 185 0.97

2 13 0.0073 0.57 11.4 0.9 1 23 191 216 191 216 0.95

3 13 0.00035 0.027 15.5 9.5 1 23 221 243 221 243 0.96

4 13 0.0014 0.11 13.6 10.6 1 23 249 271 249 271 0.99

5 13 3.8e-06 0.0003 21.7 0.7 1 23 277 299 277 299 0.96

6 13 0.00018 0.014 16.4 1.4 1 23 305 327 305 327 0.98

7 13 5.3e-06 0.00041 21.2 0.8 2 23 333 355 332 355 0.93

8 13 0.093 7.2 7.9 0.1 3 23 374 394 373 394 0.97

9 13 1.9e-06 0.00015 22.6 1.4 1 23 398 420 398 420 0.99

10 13 0.0013 0.099 13.7 4.4 3 23 429 450 427 450 0.94

11 13 2.5e-05 0.0019 19.1 0.7 2 23 458 479 457 479 0.98

12 13 1.5e-05 0.0012 19.8 0.1 1 23 485 507 485 507 0.98

13 13 0.00042 0.032 15.3 0.5 1 23 513 535 513 535 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.8e-06	0.00061	20.7	4.7	1	23	163	185	163	185	0.97
2	13	0.0073	0.57	11.4	0.9	1	23	191	216	191	216	0.95
3	13	0.00035	0.027	15.5	9.5	1	23	221	243	221	243	0.96
4	13	0.0014	0.11	13.6	10.6	1	23	249	271	249	271	0.99
5	13	3.8e-06	0.0003	21.7	0.7	1	23	277	299	277	299	0.96
6	13	0.00018	0.014	16.4	1.4	1	23	305	327	305	327	0.98
7	13	5.3e-06	0.00041	21.2	0.8	2	23	333	355	332	355	0.93
8	13	0.093	7.2	7.9	0.1	3	23	374	394	373	394	0.97
9	13	1.9e-06	0.00015	22.6	1.4	1	23	398	420	398	420	0.99
10	13	0.0013	0.099	13.7	4.4	3	23	429	450	427	450	0.94
11	13	2.5e-05	0.0019	19.1	0.7	2	23	458	479	457	479	0.98
12	13	1.5e-05	0.0012	19.8	0.1	1	23	485	507	485	507	0.98
13	13	0.00042	0.032	15.3	0.5	1	23	513	535	513	535	0.98

Sequence Information

Coding Sequence: atgaatagcaGTGTTAAATTGAGTTTAGATAAAATTTGTAGAATTTGCTTAAAAGAGAGTTCTAAAATGAAAGGGCTTTTTATTACTGAAGAAGGCCTTTCACCACGATTTTATGAAATGATCATGTCTTGCACTAAAGTTGTGatTACTGAAAATGATGGTTTACCTGCTCAACTTTGTGAGTCTTGTGCAACTCAGTTAACTAAATTATATTCTTTCAAGAGCCAATGTGAAAGTGCGGACATTAGCTTACGTCAATTTCTACTAGATCCACTTTCTGATGTCGATTCCAATATCGCACATAAAATGgacgatgaaaataaaaatgcttcattgtatgtaaattatgGCGaTGAAATTATAGATATGGTTCAGGATGAAGAATTATCAAATATTCAACAATTCATCAATAATGATTCCATAGAAACCAACCCAATAAAAGAtctcatagataaagtaaaaataaatgaaatcaaaaaattgaagCACAAATGCAGCATATGTGGAAAATGCTTCAGAAAATTGAATGATTTACAGCGGCATGAAGCTACTCATGATCCCGACAAACCATATTATTGccaattcGGTAGATGCAGATGGACTTTCGCTACAGAGCATGAATTGATAGTACATACTAATGTAAATCATTCTAGTGGTACACACGAGTGTCGCTTTTGTCACAAGACATTCAAACACTCTCGAAATCTTCGGCAACACATGATACAGCACAAATTGACCAAACGATTTCAGTGTAAACACTGCCACAAagGTTTTAACCTTTTACATCATTTACAAAATCACGAGAGAACACACACGGGAGATTTACCTTTTTTGTGTCAAAAATGTGGACGAGCCTTTGTTACCAAAGATAGaCTAAATGTTCATATACGTCGACATTTAGATATTCGCCCATATTCATGCAAGAAttgcgaaaaaaaatttattactgTTACAGAACTCAAAGTGCATTTCAAAATACATTCAGAGGATCGACTTATGTGTTCTGTTTGTGGTAAAACGTTTAATGCTCCTTACAACCTAAATAAACATATGCACGCCCAACACAGACAAATAGACGCCAAGGATGTAGGTTCATCACAAGATCATTTCATATCTGCCTGTAACATATGTGGTTTTCTTGCCGAAACCCTCCAACAACTCGATCAACATATGAAGAGTCATACTTGTCAATATTCTTGTCCACATTGCGAAAAATCATTTCCATTAACAAGTTCTTTAGAAACTCACATAAAAACACATTCGTCCGGCGATAGgtCACATCTGTGCACAATTTGCAATTGTGGCTTTAATCGTGCTGAACACCTACGTGTGCATATTATACGAAGACACAACACCGCAgctaaatcaaataaatgttcTCGATGTCCACGTTCATTTCCATTTGCTCGCGATCTAACTGTTCATTTACGCACGCATGATAAAAATCGGCCTTATGTTTGTTCGGAATGTGGTCGCGGTTTTACCACATCGGGAGGGATGCGTGTTCATTCTCGTATCCATAGCGGAGAACGTCCTTACATTTGTAACGTTTGCCGTCGTGGTTACCATTCCAGCGGAGCTCTCGTAGGTCATATGCGTACTCACAGTAGCAATGTCATAACTTCCACCAAGAATTCTCCAACGCTGCAGgtaaaaaatattcaaaacgaGATCTCTAGGCAAAATTCGACATCAGTGTCTCCAGTAGTTGACAAGGAATCAGATAGTTTAAGTCCAGTAGTTACAGTTGTTAAACTACCAGCTGGTATACATTCTCTTaatatgaatgaacttgaaGATTTTCAACAGTCCCaacaatcagaaaattcgaTGAGAATCAACAGTCTGCAAGCAGAAGATACTTCTATTGATTTAAATCAATTAGTTGATAGTCATAATattagtaaagatgaagaggtTATTTATGACAATACCAAGTAA
Protein Sequence: MNSSVKLSLDKICRICLKESSKMKGLFITEEGLSPRFYEMIMSCTKVVITENDGLPAQLCESCATQLTKLYSFKSQCESADISLRQFLLDPLSDVDSNIAHKMDDENKNASLYVNYGDEIIDMVQDEELSNIQQFINNDSIETNPIKDLIDKVKINEIKKLKHKCSICGKCFRKLNDLQRHEATHDPDKPYYCQFGRCRWTFATEHELIVHTNVNHSSGTHECRFCHKTFKHSRNLRQHMIQHKLTKRFQCKHCHKGFNLLHHLQNHERTHTGDLPFLCQKCGRAFVTKDRLNVHIRRHLDIRPYSCKNCEKKFITVTELKVHFKIHSEDRLMCSVCGKTFNAPYNLNKHMHAQHRQIDAKDVGSSQDHFISACNICGFLAETLQQLDQHMKSHTCQYSCPHCEKSFPLTSSLETHIKTHSSGDRSHLCTICNCGFNRAEHLRVHIIRRHNTAAKSNKCSRCPRSFPFARDLTVHLRTHDKNRPYVCSECGRGFTTSGGMRVHSRIHSGERPYICNVCRRGYHSSGALVGHMRTHSSNVITSTKNSPTLQVKNIQNEISRQNSTSVSPVVDKESDSLSPVVTVVKLPAGIHSLNMNELEDFQQSQQSENSMRINSLQAEDTSIDLNQLVDSHNISKDEEVIYDNTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -