Basic Information

Insect: Arctopsyche grandis
Gene Symbol: -
Assembly: GCA_029955255.1
Location: JARCGT010000065.1:5906502-5911625[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.5e-05 0.0042 18.1 0.2 1 23 197 219 197 219 0.98

2 14 0.053 4.1 8.7 1.7 1 20 225 244 225 247 0.94

3 14 0.00029 0.022 15.8 4.4 1 23 253 276 253 276 0.98

4 14 6.8e-07 5.3e-05 24.1 1.9 1 23 282 304 282 304 0.96

5 14 0.008 0.62 11.2 7.1 1 23 309 332 309 332 0.94

6 14 0.00025 0.019 16.0 1.9 2 23 341 361 340 361 0.96

7 14 4.5e-05 0.0035 18.3 7.1 1 23 366 388 366 388 0.98

8 14 4.5e-06 0.00035 21.5 0.9 1 23 394 416 394 416 0.98

9 14 5.5e-06 0.00042 21.2 2.4 1 23 422 444 422 444 0.99

10 14 2e-05 0.0016 19.4 0.6 1 23 450 472 450 472 0.98

11 14 8.8e-05 0.0068 17.4 6.3 1 23 478 500 478 500 0.97

12 14 5.3e-06 0.00041 21.2 0.6 1 23 506 528 506 528 0.98

13 14 0.00068 0.053 14.6 3.4 1 22 534 555 534 558 0.91

14 14 0.046 3.6 8.8 2.4 1 19 667 685 667 691 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.5e-05	0.0042	18.1	0.2	1	23	197	219	197	219	0.98
2	14	0.053	4.1	8.7	1.7	1	20	225	244	225	247	0.94
3	14	0.00029	0.022	15.8	4.4	1	23	253	276	253	276	0.98
4	14	6.8e-07	5.3e-05	24.1	1.9	1	23	282	304	282	304	0.96
5	14	0.008	0.62	11.2	7.1	1	23	309	332	309	332	0.94
6	14	0.00025	0.019	16.0	1.9	2	23	341	361	340	361	0.96
7	14	4.5e-05	0.0035	18.3	7.1	1	23	366	388	366	388	0.98
8	14	4.5e-06	0.00035	21.5	0.9	1	23	394	416	394	416	0.98
9	14	5.5e-06	0.00042	21.2	2.4	1	23	422	444	422	444	0.99
10	14	2e-05	0.0016	19.4	0.6	1	23	450	472	450	472	0.98
11	14	8.8e-05	0.0068	17.4	6.3	1	23	478	500	478	500	0.97
12	14	5.3e-06	0.00041	21.2	0.6	1	23	506	528	506	528	0.98
13	14	0.00068	0.053	14.6	3.4	1	22	534	555	534	558	0.91
14	14	0.046	3.6	8.8	2.4	1	19	667	685	667	691	0.91

Sequence Information

Coding Sequence: ATGGATTCTAATAAGAGCTCCGAAGATAGTTCTGAAGATGCCTCAGATTCTGAAGACAACATGCCAGTGAAACGTTTAAAAGAAAGATCTGAGAACAATACGGAAATTGTTACGATGAATGACGCTGACGCCGATGGTGTCGATTTAACAATGACAGTTGAAATGGCTGTCGACAGTGATATAGAAAACCGTGCcaAAAAATGTTTAAAGCGTAAATCTTCAAAATCCAACGATGAGAATTCAGGAAACGATTCTCAATCTGATGATATTAGCTCTAGCGAAACCGACGGTGAAATCATCGAAATGCACACTGAACCGATCACTCATCGTAACCAATTCTTCAAATCTTTCAAATTTGGTCCACAGCCTGAAGTTAAATTACCAGATATTATGATGCCTGAAGGATTTGGAGAACCTATTACAGTAGTTCCTATAAAACAAGAATACAATGACGATGAAGAACCTCCTCCTGAAGAGGAGTTGGAAGATACACCTGAAATTAAATTGGAAGTTGAAATCAAGCAGAAATCAAAAAAAGTAAAACATATAACAGATGTAGAATTGGCCGAGCtaaatgcaaaatttttatttgtttgccAAATGTGTCAAGAGCCATTCTCCGATGTAGACTTACTCAAACAGCATCTCTCGACGCACGAACAGAAAGGAACATACTTATGCAAAACTTGCGATAGAGTATATCAGAGCATTAAAGAATTAAGgTTGCATATGGTGTGTCATATAAAATCTGGCAATTTCAAATGCGAAGACTGCGGCAAGATGTATCACCATACACAAAGTCTGATGGCTCACCGTAAACGATGGCATACAGATGAACGGCCTCACTTTTGTGAAGTTTGTGGCAAAACGTTCAGTTTGAAGAATGATCTCACGGCTCACATGCGCAGCCACAGCAGTGATCGTCACCATTGTGAATATTGTAACAAAGCTTTCCGAACGGACAGgtatttacgtatacatacaaAGCATGTTCATTTAGGATTTAAATATGCCCTTATAGAATGTAACATATGCAATAAAACATTtcagaaaaagaaTCTCTTGTCTCATAAAAAGCTTCACGAAGAAAAGTCGCACAAGTGTCATTATTGTGGTAAATGCATGACGACTTCTTACAGTCTCATCGCACATATACGAAGACACGAAGGTGTTAAGCCGTTTGTATGTCAGATTTGCAATAAAGCTTTCGTCGATAAAGGTAAACTAGCCCGTCACCTTCACTCGCATAGAGGAACTAGAGATTATCAATGTGATCTTTGCGAGAAGAGTTTTTCCGAAAGCCAATACCTTAGACAACACAAACGAACCCACGATCACACTAAGAGATATCCATGTAAAGTTTGCGGTACTATGTTCAAAAGTATGAATTCAGTTTGGTCTCATATGCGTAAGCATACTCATAAAAACAGATATGAATGCCACTTCTGCGGAAAAACTTGTTACAGgcCTGATCATTTACGTTCTCATCTTGTTAGTCACACCGGAATTAAAGATTTTCAATGCGAAATCTGTTCGAAACGTTTCGCAAAGGCCTACGATCTTACGGAGCACCGACGCGGTCACAGTGGCGAAAGACCTTACGTCTGTAAATTGTGTAATAGAGCTTTCGCAAGACACGGAGAGTTCAGAAAACACAAGCAAAGCAAGTATCATGCGGAGAAGGAGCGCGAGGCCTGTGGGGAGTCGCCAACTTTGGCGCCCCCACGGGATCCGCCGCCTCGTCCGTTTTCTTGCCTTCCGTGCAATAAGCATTTTATAAGCGCGGCGAGATTAGCCTTACACTGTAAGAGAAAATCGCACGCGGCTAAGGACACCTCTCCTGCGTCCACTTACTCAGACAATAGACACAAAACGCGCAAATACCATTTAGAAAAGTTGCGTGAAATGGAGTTGAGTGCGTCGAACGGTGAGGAAGCAAACAAAGCTTTGATTGAAGCTGCGACTCCTCCGCCCCCTCGTGATCCACCTGCTCGGCCATTTCAATGTACGCCTTGTGGTAAAACGTTTGTATCTTCGGCAAGTTTTGCGTTGCACTGTAAGAGACAATCGCATATGGCTAAAGGTCTGACTCCGTTGTCTCCTGAGCCTTCGTCAAATAATGGAGGTGCTGattga
Protein Sequence: MDSNKSSEDSSEDASDSEDNMPVKRLKERSENNTEIVTMNDADADGVDLTMTVEMAVDSDIENRAKKCLKRKSSKSNDENSGNDSQSDDISSSETDGEIIEMHTEPITHRNQFFKSFKFGPQPEVKLPDIMMPEGFGEPITVVPIKQEYNDDEEPPPEEELEDTPEIKLEVEIKQKSKKVKHITDVELAELNAKFLFVCQMCQEPFSDVDLLKQHLSTHEQKGTYLCKTCDRVYQSIKELRLHMVCHIKSGNFKCEDCGKMYHHTQSLMAHRKRWHTDERPHFCEVCGKTFSLKNDLTAHMRSHSSDRHHCEYCNKAFRTDRYLRIHTKHVHLGFKYALIECNICNKTFQKKNLLSHKKLHEEKSHKCHYCGKCMTTSYSLIAHIRRHEGVKPFVCQICNKAFVDKGKLARHLHSHRGTRDYQCDLCEKSFSESQYLRQHKRTHDHTKRYPCKVCGTMFKSMNSVWSHMRKHTHKNRYECHFCGKTCYRPDHLRSHLVSHTGIKDFQCEICSKRFAKAYDLTEHRRGHSGERPYVCKLCNRAFARHGEFRKHKQSKYHAEKEREACGESPTLAPPRDPPPRPFSCLPCNKHFISAARLALHCKRKSHAAKDTSPASTYSDNRHKTRKYHLEKLREMELSASNGEEANKALIEAATPPPPRDPPARPFQCTPCGKTFVSSASFALHCKRQSHMAKGLTPLSPEPSSNNGGAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -