Agra003604.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000010.1:19473342-19474799[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6e-05 0.0012 19.8 3.2 1 23 119 141 119 141 0.98 2 12 9.9e-05 0.0076 17.3 1.7 1 23 147 169 147 169 0.98 3 12 8.2e-07 6.4e-05 23.8 1.3 1 23 175 197 175 197 0.98 4 12 3.5e-07 2.7e-05 25.0 3.4 1 23 202 224 202 224 0.98 5 12 3e-06 0.00023 22.0 1.0 1 23 230 252 230 252 0.98 6 12 0.0069 0.53 11.5 4.5 1 20 258 277 258 280 0.94 7 12 2.3e-06 0.00018 22.4 0.4 1 23 286 308 286 308 0.98 8 12 9.8e-06 0.00076 20.4 3.8 1 23 314 336 314 336 0.98 9 12 4.6e-05 0.0035 18.3 4.8 1 23 342 364 342 364 0.99 10 12 4.7e-05 0.0037 18.3 1.3 1 23 370 392 370 392 0.98 11 12 0.98 76 4.7 0.7 5 19 396 410 395 411 0.95 12 12 8.8e-06 0.00068 20.6 4.1 1 23 416 438 416 438 0.98
Sequence Information
- Coding Sequence
- ATGGAGTGTCGAATCTGTCTCAATTATGCATCAACTTTATCTTCCTTCTCCATTTTTGACAATTCTACTTTATTGGTGCAACGACTTTGGAGCTGCTTTCGGCTTCAGGTTGAAAGAGATCATACACTTCCAGAAACAATATGTCTGTCTTGCGAATCCAATCTGACATCTTTGACCCATTTTAAGACCGTTTGCACTCAAAGTGACAAAACACAAAGACTAAGAAACGCCGAGTCTTGCAACATCAAAACGGAAGAAGTCATCGTTGACGATTTAATTTGGGATGATCAAAAGAGTTCAAAAATTGTCGAGTCTACGTCTGTTGAAAATGTATCGAAAGTTTCCAACAAAGCCCACACATGCGAAATATGTTTGAAGCCGTTCAATTTTAAATCTCACCTCGCGTTACATATGATGACGCACACTGGagaaaaaccacacaaatgcggACTCTGCCCCAAGACCTTCTCTTGGAAAAGCAATATGCTGATGCATATGAAGGTGCACACCGGTGAAAAGCTGCACCAATGCGAGCTCTGCCCGAAATCCTTCATTTCAAAATACAATATGTTGGCGCACATGAACATGCACACGGGAAGAAAACACACTTGCGAAATCTGCTCCAAATCCTTCGGGCGCAAATACAACTTGTCCAAACACATGAAGGTGCACACCGGACCCCACATCTTCAACTGCGACGTCTGCTCCAAGTCGTACACCCGCAAACCCAGCCTGGTGGTGCACATGAAGAAGCACACCGGCGAAAAACCGCACAGGTGCAAAATATGCACCGAATCGTTCGTGCACAAGTACACTCTGGACCATCACACGTGGCTTCACACCGGAGACAAGCTGTACAAATGCGATGTTTGCGCAAAGTCCTTCGTGTACAAAACCAACCTGGTCAAACATATAAACGCTCACACCGGCACTCGTCTGCACAAATGCGAACTCTGTACAAAATCGTACAAAGACAAGTATACCCTGGCCGAGCATATGAAGAGACACGCCGGCGACACGACTTACAAATGTGAGGTGTGCTCAAAGTCGTTCTTTCACAGGACTTCTTTTGCCTACCACATACGCACACACAACAGAAccaagccacacaaatgtgcgATTTGTTTGAAGGCTTTCATATACAAATCTCAGCTTGCGAAGCACAAGATGATTCACGAGCTGCGCAAGTGTGATAAACGTTTAAAGTCGTACGTGCATTTGAACACGCATAACGGAGCCAGGCCACACGAGTGTGACGTCTGTTTTAAATCGTTCACTCGTAAACCCCACCTGGTGTTGCATATGAAGTCGCACAACAGAGTCTAa
- Protein Sequence
- MECRICLNYASTLSSFSIFDNSTLLVQRLWSCFRLQVERDHTLPETICLSCESNLTSLTHFKTVCTQSDKTQRLRNAESCNIKTEEVIVDDLIWDDQKSSKIVESTSVENVSKVSNKAHTCEICLKPFNFKSHLALHMMTHTGEKPHKCGLCPKTFSWKSNMLMHMKVHTGEKLHQCELCPKSFISKYNMLAHMNMHTGRKHTCEICSKSFGRKYNLSKHMKVHTGPHIFNCDVCSKSYTRKPSLVVHMKKHTGEKPHRCKICTESFVHKYTLDHHTWLHTGDKLYKCDVCAKSFVYKTNLVKHINAHTGTRLHKCELCTKSYKDKYTLAEHMKRHAGDTTYKCEVCSKSFFHRTSFAYHIRTHNRTKPHKCAICLKAFIYKSQLAKHKMIHELRKCDKRLKSYVHLNTHNGARPHECDVCFKSFTRKPHLVLHMKSHNRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -