Basic Information

Insect: Arctopsyche grandis
Gene Symbol: -
Assembly: GCA_029955255.1
Location: JARCGT010000017.1:3844930-3847647[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.079 6.1 8.1 5.6 1 23 100 123 100 123 0.96

2 15 0.015 1.1 10.4 1.1 1 23 136 158 136 158 0.90

3 15 8.2e-05 0.0064 17.5 0.6 1 23 167 190 167 190 0.95

4 15 8e-05 0.0062 17.5 3.3 1 23 196 218 196 218 0.97

5 15 0.0022 0.17 13.0 3.2 1 23 224 246 224 246 0.98

6 15 0.0087 0.68 11.1 7.2 1 23 252 274 252 274 0.98

7 15 3e-06 0.00023 22.0 0.8 2 23 281 302 280 302 0.95

8 15 5.1e-06 0.00039 21.3 2.3 1 23 464 486 464 486 0.97

9 15 0.00021 0.016 16.2 2.5 1 23 492 514 492 514 0.96

10 15 3.6e-05 0.0028 18.6 1.6 2 23 520 541 519 541 0.97

11 15 1.3e-05 0.00098 20.0 0.5 1 23 547 569 547 569 0.98

12 15 7.4e-06 0.00058 20.8 0.2 1 23 575 597 575 597 0.98

13 15 4.7e-06 0.00036 21.4 1.5 1 23 603 626 603 626 0.97

14 15 0.00015 0.011 16.7 0.8 1 23 632 655 632 655 0.97

15 15 0.00025 0.019 16.0 0.1 2 21 662 681 661 682 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.079	6.1	8.1	5.6	1	23	100	123	100	123	0.96
2	15	0.015	1.1	10.4	1.1	1	23	136	158	136	158	0.90
3	15	8.2e-05	0.0064	17.5	0.6	1	23	167	190	167	190	0.95
4	15	8e-05	0.0062	17.5	3.3	1	23	196	218	196	218	0.97
5	15	0.0022	0.17	13.0	3.2	1	23	224	246	224	246	0.98
6	15	0.0087	0.68	11.1	7.2	1	23	252	274	252	274	0.98
7	15	3e-06	0.00023	22.0	0.8	2	23	281	302	280	302	0.95
8	15	5.1e-06	0.00039	21.3	2.3	1	23	464	486	464	486	0.97
9	15	0.00021	0.016	16.2	2.5	1	23	492	514	492	514	0.96
10	15	3.6e-05	0.0028	18.6	1.6	2	23	520	541	519	541	0.97
11	15	1.3e-05	0.00098	20.0	0.5	1	23	547	569	547	569	0.98
12	15	7.4e-06	0.00058	20.8	0.2	1	23	575	597	575	597	0.98
13	15	4.7e-06	0.00036	21.4	1.5	1	23	603	626	603	626	0.97
14	15	0.00015	0.011	16.7	0.8	1	23	632	655	632	655	0.97
15	15	0.00025	0.019	16.0	0.1	2	21	662	681	661	682	0.93

Sequence Information

Coding Sequence: ATGGAGGGCAAATTTGAGATCGAAACAGTGCATATAAAGACTGAAGTAGATCTTGATTATTACTCGCAATATGAAAAGTATGATGATAAGGATCCTACAAAATCTAGTCGCaaggTCTCACCTAAAAAACCAAAGAAAAAACACAATTCGGATGACAGAACTGAATCACCAGCGTGGACTCAAAGCAAACGAAAAGCAAATACCAGGCTCAAAAAAGTTATACCGGAagataaacttttaattttagaaGACAAAGACTTGCCATACTTTGTAGACTATTCGAGAGATGGTAAACCATTCTGCTGTCGGAATTGCAACGACAGCTTTCCTCGTCTGAGCACGCTCATGCAGCACATACACAAGAAGCACGAAGGCATAGAAGTTCCACGTGGCGATCACGTCGCATTCAGGTGTCCGGATTGTGAGAAGATGTTCTTCAAACACGGTCCGTACATATCGCACCGAGTAGCCCACACGGATCCCTCAAACCAAAAGATGTTCATTTGCGATCTGTGCGGCCGATCTTTCGAATTCAAATACATGGTCCGAAGACACATGGTCAGCCTGCACTCGGCAGCAACTTCCTATTATTGCGAACCGTGCAATCGATACTTCGGCCAAAAGTCCCACCTGGTCCGGCACATGAGACGGCACAACGGTCCCAAAGAGTACAAATGCCCAGAGTGCGAGTTGAAGTTCAAGAACAAATTCCTTTTAGAGTGTCACGTTCGAAATCACAACAAAGAGAGACCGTTTAAATGCCATCTATGTCGGAAGATGTACTATTTCGAATTTCACTTGCAGACACACTTGCGGGCTCACTTTAAGAAAGGCGGCTTACAGTGTGACGTCTGCGAGCGATTCTTCAGCACGAGGAGCAATCTTCAACGGCACTATGTAATACACGGAGAAAAGCCTGATGCTAACACTGGAATGCAATGTAAAGTTTGCAGCACGTGGCATAAAAATCGGCATCAACTTTTGAAACATATGAAGAAGAAACACGTAACGGAGAAAGGATTGGAAGATTTTGCATACGCCAATGAAATTCCGGCATACGATGAAAGCGATTCTATTGCTGTGAATAATTTCGATTCAACATTTCAAACCGATGACagttttgttattaaaaaagaAATCAAAACCGAAGAAGCTCTGGAGCCAATCGATTACGTGGATGACTCAATTACTAAAgtggaaataaaaattgaacccAAAGACTACTTTGAAACAGACGACGACGagtctaaagtcgacgatccaatagaaaaaaataaatatatgtacgatgTTAAGGTAGAGTCTGATTTGCCCGACTCGGAATCGAATAAGGAGTCGAAGGTCAGTCAGTTGGATATCGTACAGTTTATAGACGAGATTGAAAAGCCGCACAAATGTCCcgtttgttcgaaagcattcaAGTTCCAGTCGAAGCTGAAGACTCATATGGGCATACATAACGTTGAAAGACCGCACATTTGCCGAGTGTGCAATATGTCGTTCAATCAAGAAAGGTACCTCAACCAGCATATGCTGCGCCATGGCGACAAGATGCTACGTTGCAAATTGTGtcctaaaatattcaaaatgagCAAGAGTCTGAACCAACACGTCAAGACGCATTACGGCATCAAACCGTACGTTTGTCTGAGGTGTGACAAGTCTTTCACGTATCCCAAGAGTCTGGAGATCCACAGCCGAGTTCACACCGGCGTACGGCCGTACGTGTGCAACTACTGCGAGCGGGCATTCACCATGAAGAGTGGTCTGCAATCGCACCTCGCCGTGCACACCCTGGAGAAGCCGTTCGTTTGCGACTATTGCGAGAAGTGCTTCCCGGCCAAGTATCAGCTCCGGAGGCACATCATCCGCGCGCACACCCAATGGAGACCGTTCAAGTGCGACAGATGTTCGACAACCTTCACCGAGCTGAATCTTTTGAATAGGCACATCGACACAGTTCACTTTGAAGGTGCCGCCATATCGTGCGAAGTCTGCACCAGGTCTTATCGGAATCAAGGCAGTCTGGCTAGACACATTGCGAGGAGTCCTCGCTGTCAGAACAGTCTCATGGATTGA
Protein Sequence: MEGKFEIETVHIKTEVDLDYYSQYEKYDDKDPTKSSRKVSPKKPKKKHNSDDRTESPAWTQSKRKANTRLKKVIPEDKLLILEDKDLPYFVDYSRDGKPFCCRNCNDSFPRLSTLMQHIHKKHEGIEVPRGDHVAFRCPDCEKMFFKHGPYISHRVAHTDPSNQKMFICDLCGRSFEFKYMVRRHMVSLHSAATSYYCEPCNRYFGQKSHLVRHMRRHNGPKEYKCPECELKFKNKFLLECHVRNHNKERPFKCHLCRKMYYFEFHLQTHLRAHFKKGGLQCDVCERFFSTRSNLQRHYVIHGEKPDANTGMQCKVCSTWHKNRHQLLKHMKKKHVTEKGLEDFAYANEIPAYDESDSIAVNNFDSTFQTDDSFVIKKEIKTEEALEPIDYVDDSITKVEIKIEPKDYFETDDDESKVDDPIEKNKYMYDVKVESDLPDSESNKESKVSQLDIVQFIDEIEKPHKCPVCSKAFKFQSKLKTHMGIHNVERPHICRVCNMSFNQERYLNQHMLRHGDKMLRCKLCPKIFKMSKSLNQHVKTHYGIKPYVCLRCDKSFTYPKSLEIHSRVHTGVRPYVCNYCERAFTMKSGLQSHLAVHTLEKPFVCDYCEKCFPAKYQLRRHIIRAHTQWRPFKCDRCSTTFTELNLLNRHIDTVHFEGAAISCEVCTRSYRNQGSLARHIARSPRCQNSLMD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -